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January 2019

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Subject	From	Date	Size
[git/dials] master: Update scaling test with reminder to explore further. (481f7a138)	DIALS commit	Thu, 31 Jan 2019 16:53:39 +0000	93 lines
[git/dials] master: Implement new reflection selection algorithm for scaling. (260c766c7)	DIALS commit	Thu, 31 Jan 2019 16:23:42 +0000	123 lines
[git/dials] master: A little more info in a help message (2c0e35d9b)	DIALS commit	Thu, 31 Jan 2019 16:05:39 +0000	110 lines
[git/dials] master: 🤷 (0030a2438)	DIALS commit	Thu, 31 Jan 2019 08:26:15 +0000	81 lines
[git/dials] master: fix blosc installation failure (ed4e3da78)	DIALS commit	Thu, 31 Jan 2019 08:16:33 +0000	79 lines
[git/dials] master: include msgpack in installer (ae0e829ee)	DIALS commit	Thu, 31 Jan 2019 08:12:52 +0000	79 lines
[git/dials] master: halraiser as contextmanager (5c0d86142)	DIALS commit	Wed, 30 Jan 2019 12:17:37 +0000	138 lines
[git/dials] master: Add blosc dependency, catch specific error (76337e20a)	DIALS commit	Wed, 30 Jan 2019 10:17:33 +0000	121 lines
[git/dials] master: looks redundant, but don't touch this (b2cffcc1d)	DIALS commit	Wed, 30 Jan 2019 09:54:18 +0000	81 lines
[git/dials] master: Merge branch 'msgpack_support' (364f3e95e)	DIALS commit	Wed, 30 Jan 2019 09:50:08 +0000	87 lines
[git/dials] master: Update test_phil for experiment list changes (a71b0d075)	DIALS commit	Wed, 30 Jan 2019 09:49:50 +0000	165 lines
[git/dials] master: Add msgpack python package dependency (9e0018c9d)	DIALS commit	Wed, 30 Jan 2019 09:49:50 +0000	93 lines
[git/dials] master: Changed from except to except Exception (fda44900c)	DIALS commit	Tue, 29 Jan 2019 09:15:29 +0000	87 lines
[git/dials_data] master: Merge pull request #19 from dials/update-blend_tutorial (af82923)	dials_data commit	Mon, 28 Jan 2019 15:52:13 +0000	66 lines
[git/dials_data] master: Update file information for dataset blend_tutorial (4ce6682)	dials_data commit	Mon, 28 Jan 2019 15:37:27 +0000	197 lines
[git/dials_data] master: Trigger update of dataset blend_tutorial (4a4b339)	dials_data commit	Mon, 28 Jan 2019 15:34:14 +0000	54 lines
[git/dials_data] master: Merge pull request #18 from dials/blend_tutorial (f1ecc4d)	dials_data commit	Mon, 28 Jan 2019 15:32:39 +0000	66 lines
[git/dials_data] master: Add blend tutorial definition (e9d9150)	dials_data commit	Mon, 28 Jan 2019 14:55:14 +0000	190 lines
[git/dials] master: For #695 - use shorter labels so stack widget visible (91f4af4a5)	DIALS commit	Mon, 28 Jan 2019 08:30:00 +0000	109 lines
[git/dials] master: Update msgpack, add blosc compression (13e829ac6)	DIALS commit	Fri, 25 Jan 2019 16:41:51 +0000	430 lines
[git/dials] master: Changed the way the arrays are serialized so that an array is serialized as a binary blob rather than an msgpack ARRAY type. This takes less space and is much faster especially in the case of arrays of vec3/mat3 etc. The Shoebox column is a special case that is serialized as an array of Shoeboxes since a single Shoebox is itself a struct with arrays in. (6e4a5c1d1)	DIALS commit	Fri, 25 Jan 2019 16:41:51 +0000	1041 lines
[git/dials] master: Added proper msgpack support doing the serialization in C++. Requires the msgpack-c C++ head files (a8917d4fb)	DIALS commit	Fri, 25 Jan 2019 16:41:51 +0000	1735 lines
[git/dials] master: Changed the top level structure to be a map rather than array to make it easier to add more meta data in the future. (c4f44e3d7)	DIALS commit	Fri, 25 Jan 2019 16:41:51 +0000	413 lines
[git/dials] master: Changed msgpack header format and removed old redundant test (9cb124053)	DIALS commit	Fri, 25 Jan 2019 16:41:51 +0000	424 lines
[git/dials] master: Added pack and convert for tiny and c_grid to/from msgpack array rather than binary type (e55b5f5ed)	DIALS commit	Fri, 25 Jan 2019 16:41:51 +0000	451 lines
[git/dials_data] master: Bump version: 0.4.0 → 0.5.0 (c00bc91)	dials_data commit	Thu, 24 Jan 2019 14:58:41 +0000	195 lines
[git/dials_data] master: Merge pull request #17 from dials/update-vmxi_thaumatin (8b7f34c)	dials_data commit	Thu, 24 Jan 2019 14:33:44 +0000	67 lines
[git/dials_data] master: Update file information for dataset vmxi_thaumatin (91e5234)	dials_data commit	Thu, 24 Jan 2019 14:20:35 +0000	95 lines
[git/dials_data] master: Fix download URL (e41d243)	dials_data commit	Thu, 24 Jan 2019 14:13:05 +0000	97 lines
[git/dials_data] master: Trigger update of dataset vmxi_thaumatin (2664a70)	dials_data commit	Thu, 24 Jan 2019 13:52:08 +0000	54 lines
[git/dials_data] master: Example VMXi thaumatin data set from Eiger2X 4M (#16) (fe30409)	dials_data commit	Thu, 24 Jan 2019 13:50:59 +0000	100 lines
[git/dials_data] master: Merge pull request #15 from dials/update-fumarase (c9e5b05)	dials_data commit	Thu, 24 Jan 2019 12:36:35 +0000	66 lines
[git/dials_data] master: Update file information for dataset fumarase (19434a4)	dials_data commit	Thu, 24 Jan 2019 12:07:24 +0000	586 lines
[git/dials_data] master: Trigger update of dataset fumarase (5383361)	dials_data commit	Thu, 24 Jan 2019 12:02:03 +0000	54 lines
[git/dials] master: Add try except for symmetry to guard against resolutionizer RuntimeErrors (30dd2c5eb)	DIALS commit	Thu, 24 Jan 2019 12:01:30 +0000	171 lines
[git/dials_data] master: Merge pull request #14 from dials/fumarase (d4f0beb)	dials_data commit	Thu, 24 Jan 2019 12:00:42 +0000	66 lines
[git/dials] master: Improve speed of prf/sum intensity combination in scaling. (070dc1d83)	DIALS commit	Thu, 24 Jan 2019 10:21:37 +0000	424 lines
[git/dials_data] master: Add fumarase dataset (c339253)	dials_data commit	Thu, 24 Jan 2019 08:31:30 +0000	522 lines
[git/dials] master: Fix tutorial text after changes in 5bb45af82 (1e44e6f11)	DIALS commit	Wed, 23 Jan 2019 14:33:10 +0000	199 lines
[git/dials] master: Fix for image viewer mask tool broken by 86f27a4f36843e566d326f4fa9e5f8708761d7f3 (15488a37a)	DIALS commit	Wed, 23 Jan 2019 10:15:32 +0000	124 lines
[git/dials] master: add xfailing test for #693 (5d6dabcad)	DIALS commit	Tue, 22 Jan 2019 14:36:50 +0000	108 lines
[git/dials] master: Update test for multi_dataset_handling (b46ba93ad)	DIALS commit	Tue, 22 Jan 2019 11:49:33 +0000	87 lines
[git/dials] master: Fix bug in scaling Ih_table (74605c194)	DIALS commit	Tue, 22 Jan 2019 11:34:37 +0000	138 lines
[git/dials] master: Tidy but does not seem to actually do anything much (7373ec7f7)	DIALS commit	Tue, 22 Jan 2019 11:29:58 +0000	85 lines
[git/dials] master: Sanitize formatting for class (d9436aaf5)	DIALS commit	Tue, 22 Jan 2019 11:11:41 +0000	157 lines
[git/dials] master: Sanitize formatting (8b03e633b)	DIALS commit	Tue, 22 Jan 2019 11:09:53 +0000	908 lines
[git/dials] master: Stack images widget: user can now select number of images to stack; fixes dials/dials#660 (5600666f4)	DIALS commit	Tue, 22 Jan 2019 11:06:35 +0000	146 lines
[git/dials] master: Functional interface (#689) (5f5385ce5)	DIALS commit	Mon, 21 Jan 2019 17:25:34 +0000	1712 lines
[git/dials] master: Scaling: improve memory usage for spherical harmonics model. (93a009eb2)	DIALS commit	Mon, 21 Jan 2019 15:41:38 +0000	1232 lines
[git/dials] master: Fix same bug in cosym too, occurs when no profile reflections were fitted. (baee1ceaf)	DIALS commit	Mon, 21 Jan 2019 15:24:31 +0000	114 lines
[git/dials] master: Fix bug, which can occur when no profile reflections were fitted. (afde1b0ea)	DIALS commit	Mon, 21 Jan 2019 15:17:24 +0000	124 lines
[git/dials_scratch] master: New parameter fix_unstable_detector_parameters=True (7cf7981)	DIALS Scratch commit	Mon, 21 Jan 2019 14:52:01 +0000	128 lines
[git/dials_scratch] master: Only calculate RMSDs on the reflections used in refinement. (8c382e0)	DIALS Scratch commit	Mon, 21 Jan 2019 11:42:39 +0000	97 lines
[git/dials] master: Remove integration shoeboxes at start of scaling. (e7865d74f)	DIALS commit	Fri, 18 Jan 2019 10:39:27 +0000	124 lines
[git/dials_scratch] master: Fix following dials/dials@69046afcd (b77b6de)	DIALS Scratch commit	Fri, 18 Jan 2019 09:43:03 +0000	87 lines
[git/dials] master: Fix docstrings to stop documentation build failure. (e54b36b38)	DIALS commit	Fri, 18 Jan 2019 09:10:40 +0000	224 lines
[git/dials] master: Refactor scaling intensity combination for improved memory usage (d422f7533)	DIALS commit	Thu, 17 Jan 2019 17:11:02 +0000	1839 lines
[git/dials] master: Add scaling model & outlier rejection module to documentation (ad2e956b0)	DIALS commit	Thu, 17 Jan 2019 10:13:19 +0000	1882 lines
[git/dials] master: Don't store unneeded objects to help with scaling memory usage. (4b4804dae)	DIALS commit	Thu, 17 Jan 2019 10:13:19 +0000	452 lines
[git/dials] master: Clean clutter (unused import) (d88b11ffd)	DIALS commit	Wed, 16 Jan 2019 13:57:58 -0800	83 lines
[git/dials] master: Sync StringIO 2to3 from aaa6089c712bf6b022efb5a605d6446f0a9a27b9 plus a whitespace straggler (8279f7b00)	DIALS commit	Wed, 16 Jan 2019 13:31:26 -0800	121 lines
[git/dials] master: Synch 2to3 pickle/xrange changes from 04edf365642b1fa84b0c63d2f2f9bea22ef96af8 (86f27a4f3)	DIALS commit	Wed, 16 Jan 2019 13:08:24 -0800	432 lines
[git/dials] master: Sync whitespace changes from ccb671f68d23a24f8ad859bd11216e5a17f799d4 (89f4c41f2)	DIALS commit	Wed, 16 Jan 2019 11:05:41 -0800	1966 lines
[git/dials] master: Remove redundant if statement (7683869e2)	DIALS commit	Wed, 16 Jan 2019 11:26:39 +0000	94 lines
[git/dials] master: modify error message when run with --verbose (5bdc1bb4f)	DIALS commit	Wed, 16 Jan 2019 10:53:14 +0000	116 lines
[git/dials] master: Make installer error messages useful (80db723ce)	DIALS commit	Wed, 16 Jan 2019 10:47:19 +0000	139 lines
[git/dials] master: Add 'stats_only' option to dials.scale, closes #678 (31fcbf30e)	DIALS commit	Tue, 15 Jan 2019 16:06:16 +0000	295 lines
[git/dials] master: Fix bug in dials.scale Ih_table (f7c54de5f)	DIALS commit	Tue, 15 Jan 2019 14:20:26 +0000	88 lines
[git/dials] master: Changed print out of experiments to info rather than debug to make more visible. Fixes #681 (0903f9b52)	DIALS commit	Mon, 14 Jan 2019 16:37:22 +0000	128 lines
[git/dials] master: Did a clean clutter (098a297a9)	DIALS commit	Mon, 14 Jan 2019 16:37:22 +0000	126 lines
[git/dials] master: Fixed test for panel pedestal (f77bb95e3)	DIALS commit	Mon, 14 Jan 2019 16:37:22 +0000	105 lines
[git/dials] master: If there is only a single image in the shoebox then set the z centroid as image + 0.5. Previously, as this was calculated as an intensity weighted centroid it would result in small deviations around 1e-7 from 0.5 which resulted in strange output in spot finding for a single image. Fixes #667 (174afd7c1)	DIALS commit	Mon, 14 Jan 2019 16:37:22 +0000	102 lines
[git/dials] master: Fix python 2>3 syntax in make_sphinx_html (ca537e248)	DIALS commit	Mon, 14 Jan 2019 15:45:36 +0000	84 lines
[git/dials] master: Correctly format docstring for reflection_table.as_miller_array() (b016057ce)	DIALS commit	Mon, 14 Jan 2019 15:31:51 +0000	163 lines
[git/dials] master: ignore urllib error if not in strict mode (occasionally hit github api limit) (e331f5b09)	DIALS commit	Mon, 14 Jan 2019 15:25:27 +0000	98 lines
[git/dials] master: Add reflections.as_miller_array(experiment, intensity='sum') option. (f566f4296)	DIALS commit	Mon, 14 Jan 2019 14:50:19 +0000	332 lines
[git/dials] master: Add merging stats output to dials.export mmcif (if scaled), for #281 (007bea58d)	DIALS commit	Mon, 14 Jan 2019 13:45:00 +0000	145 lines
[git/dials] master: Update scaling model plotting in dials-report (5eda3b187)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	143 lines
[git/dials] master: Remove unused post scaling analysis code (74fd7bb06)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	748 lines
[git/dials] master: Add new, simpler, Ih_table datastructures (9a05f4c0f)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	1100 lines
[git/dials] master: Update symmetry call to outlier rejection (34b8afa68)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	95 lines
[git/dials] master: Refactor outlier rejection code to use new Ih_table (e6c86f384)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	83 lines
[git/dials] master: Changes to scaler and algorithm (fa09bc8d9)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	397 lines
[git/dials] master: Refactor intensity combinaton code and add tests (cd5378329)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	1012 lines
[git/dials] master: Update and refactor scaling algorithm code, fix tests. (009cf82ff)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	141 lines
[git/dials] master: Modify scaling components behaviour. (c35d38d9e)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	1730 lines
[git/dials] master: Remove options to calculate curvatures as not practical for minimisation. (7747984e8)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	2019 lines
[git/dials] master: Code tidying, updates and tests (bc940c764)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	94 lines
[git/dials] master: Remove old Ih_table, old scaler tests and code tidying/updates (f9b93d6a7)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	117 lines
[git/dials] master: File renaming and tidying (998841e01)	DIALS commit	Mon, 14 Jan 2019 10:21:28 +0000	96 lines
[git/dials] master: relax libtbx dependencies (21bdd0193)	DIALS commit	Mon, 14 Jan 2019 09:24:04 +0000	167 lines
[git/dials] master: fix bug found by @jbeilstenedmands (c97101dc2)	DIALS commit	Fri, 11 Jan 2019 13:34:33 +0000	134 lines
[git/dials] master: Updated cosym test with failing space_group= case (950ea5dd7)	DIALS commit	Fri, 11 Jan 2019 13:19:53 +0000	102 lines
[git/dials] master: Remove now obsolete annoying banner code (f0fd2fc97)	DIALS commit	Fri, 11 Jan 2019 12:14:55 +0000	229 lines
[git/dials] master: If present, show experiment identifier for dials.show experiments.json (c8d197abc)	DIALS commit	Fri, 11 Jan 2019 11:10:42 +0000	108 lines
[git/dials] master: Remove option to append to log files (d47e41a12)	DIALS commit	Thu, 10 Jan 2019 16:44:11 +0000	203 lines
[git/dials] master: Fix undefined mscvrt unlock mode constant (53382089d)	DIALS commit	Thu, 10 Jan 2019 10:00:09 +0000	79 lines
[git/dials] master: Rationalise default logging behaviour (64f3f9777)	DIALS commit	Wed, 9 Jan 2019 18:32:36 +0000	409 lines
[git/dials] master: to_xds.XDS_INP() now returns string (9c73df11f)	DIALS commit	Tue, 8 Jan 2019 16:49:09 +0000	105 lines
[git/dials] master: convert_to_cbf: use FormatCFBMini.as_file() (86210cae6)	DIALS commit	Mon, 7 Jan 2019 17:21:09 +0000	208 lines
[git/dials] master: add dials.symmetry to programs documentation page (86980354f)	DIALS commit	Mon, 7 Jan 2019 12:14:31 +0000	157 lines
[git/dials] master: mod not module (fixes #682) (0ecdfd7f6)	DIALS commit	Mon, 7 Jan 2019 11:59:14 +0000	86 lines
[git/dials] master: not private functions since used in xia2; add docstrings (76bde0a49)	DIALS commit	Fri, 4 Jan 2019 17:37:24 +0000	265 lines
[git/dials] master: missed off commit (d7ce7d15a)	DIALS commit	Fri, 4 Jan 2019 16:28:14 +0000	87 lines
[git/dials] master: newlines; not Sorry; etc (e8a197cc7)	DIALS commit	Fri, 4 Jan 2019 15:49:52 +0000	134 lines
[git/dials] master: additional symmetry documentation (546899179)	DIALS commit	Fri, 4 Jan 2019 15:26:18 +0000	256 lines
[git/dials] master: add placeholder for scaling library documentation (24c88834a)	DIALS commit	Fri, 4 Jan 2019 15:05:19 +0000	119 lines
[git/dials] master: remove untest test script (89607d729)	DIALS commit	Fri, 4 Jan 2019 15:01:08 +0000	278 lines
[git/dials] master: satisfy pydocstyle (b2e34a610)	DIALS commit	Fri, 4 Jan 2019 15:01:08 +0000	2011 lines
[git/dials] master: generate_test_data -> private module for testing only (9688f853f)	DIALS commit	Fri, 4 Jan 2019 15:01:08 +0000	746 lines
[git/dials] master: module docstrings (2b93da34e)	DIALS commit	Fri, 4 Jan 2019 15:01:08 +0000	267 lines
[git/dials] master: remove unused class (c440496e6)	DIALS commit	Fri, 4 Jan 2019 14:28:36 +0000	115 lines
[git/dials] master: minor documentation changes (a1f7d2a12)	DIALS commit	Fri, 4 Jan 2019 11:34:04 +0000	278 lines
[git/dials] master: minor documentation fixes (cf05a5f92)	DIALS commit	Fri, 4 Jan 2019 11:00:56 +0000	174 lines
[git/dials] master: more documentation for algorithms/symmetry (a677676d9)	DIALS commit	Fri, 4 Jan 2019 10:43:10 +0000	1123 lines
[git/dials] master: refactor command_line/symmetry.py script (093389733)	DIALS commit	Thu, 3 Jan 2019 15:09:09 +0000	789 lines
[git/dials] master: move unit cell consistency check and normalisation to separate methods (732716f6a)	DIALS commit	Thu, 3 Jan 2019 12:26:40 +0000	309 lines
[git/dials] master: bug fix: don't attempt automatic determination of dimensions if max dim == 2 (610ef2f5d)	DIALS commit	Thu, 3 Jan 2019 10:49:01 +0000	93 lines
[git/dials] master: Clean up printing of merging stats in scaling. fixes #677 (170318213)	DIALS commit	Wed, 2 Jan 2019 12:11:02 +0000	260 lines
[git/dials] master: Assert to help chase down #676 (7fcb3851e)	DIALS commit	Wed, 2 Jan 2019 08:53:45 +0000	85 lines

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