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[git/dials] master: convert two more tests (9207fc4f)
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Thu, 29 Mar 2018 18:24:54 +0100 |
1298 lines |
[git/dials] master: more test conversion (4526fd26)
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Thu, 29 Mar 2018 05:42:25 +0100 |
1974 lines |
[git/dials] master: forgot renaming test file (f767d52c)
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Thu, 29 Mar 2018 00:45:05 +0100 |
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[git/dials] master: convert more tests (2483a73d)
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Thu, 29 Mar 2018 00:12:12 +0100 |
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[git/dials] master: convert massive test to pytest (136b5615)
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Wed, 28 Mar 2018 23:41:33 +0100 |
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[git/dials] master: convert test to pytest (24a83af1)
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Wed, 28 Mar 2018 23:05:42 +0100 |
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[git/dials] master: Add a help message so it is more obvious what this script does: (2abb3694)
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Wed, 28 Mar 2018 22:57:39 +0100 |
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[git/dials_scratch] master: Moved to dials (bbf10cb)
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Wed, 28 Mar 2018 22:18:04 +0100 |
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[git/dials] master: Add test for dials.generate_distortion_maps, for #471. Not closing yet as one of the two tests is incomplete and is marked to fail. Could @jmp1985 take a look? The issue is that dx, dy maps registered during import seem not to exist when the datablock is loaded (536401ec)
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Wed, 28 Mar 2018 22:17:43 +0100 |
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[git/dials] master: command line script moved here from dials_scratch (c6d250e6)
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Wed, 28 Mar 2018 22:17:43 +0100 |
469 lines |
[git/dials_scratch] master: Added RMSD in pixels to iteration output. Did clean clutter (cebf826)
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Wed, 28 Mar 2018 20:12:00 +0100 |
291 lines |
[git/dials] master: Actually call tests (844f795a)
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Wed, 28 Mar 2018 19:47:28 +0100 |
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[git/dials_scratch] master: Add additional tests (2250d09)
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Wed, 28 Mar 2018 19:32:21 +0100 |
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[git/dials_scratch] master: Added some more output per iteration (a6a6675)
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Wed, 28 Mar 2018 19:32:14 +0100 |
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[git/dials_scratch] master: Added refiner class that will do both profile and crystal refiner. Make sure likelihood works (e034dc0)
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Wed, 28 Mar 2018 19:32:14 +0100 |
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[git/dials_scratch] master: Added condition number of Jacobian as described by DGW (8c84915)
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Wed, 28 Mar 2018 19:32:14 +0100 |
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[git/dials_scratch] master: Add generator function (553ae28)
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Wed, 28 Mar 2018 19:32:14 +0100 |
242 lines |
[git/dials_scratch] master: Added mode state class and test (4026281)
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Wed, 28 Mar 2018 19:32:14 +0100 |
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[git/dials_scratch] master: Add test of derivatives for simultaneous profile and crystal refinement (a29c304)
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Wed, 28 Mar 2018 19:32:14 +0100 |
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[git/dials_scratch] master: Added Test for derivatives of full model (5b53e63)
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Wed, 28 Mar 2018 19:32:14 +0100 |
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[git/dials_scratch] master: Add fisher information and update target class (e9d947c)
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Wed, 28 Mar 2018 19:32:14 +0100 |
244 lines |
[git/dials_scratch] master: Updated some refinement stuff (470d06b)
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Wed, 28 Mar 2018 19:32:14 +0100 |
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[git/dials_scratch] master: Added reflection model state class that computes derivatives of r and s (ca5749a)
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Wed, 28 Mar 2018 19:32:14 +0100 |
885 lines |
[git/dials_scratch] master: Added more output per iteration (b580376)
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Wed, 28 Mar 2018 19:32:14 +0100 |
308 lines |
[git/dials] master: more test conversions (d49845f4)
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Wed, 28 Mar 2018 18:04:20 +0100 |
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[git/dials] master: convert more tests to pytest/Python3 (f3a6c47d)
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Wed, 28 Mar 2018 17:25:57 +0100 |
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[git/dials_scratch] master: Bugfix in scale - bad naming. (a111e41)
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Wed, 28 Mar 2018 07:46:05 -0700 |
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[git/dials] master: convert test (6842e03a)
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Wed, 28 Mar 2018 04:53:48 +0100 |
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[git/dials] master: Assert this file is not used anywhere (9327ef55)
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Wed, 28 Mar 2018 04:37:01 +0100 |
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[git/dials] master: Not ok. (5cbea2a3)
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Tue, 27 Mar 2018 23:15:30 +0100 |
452 lines |
[git/dials] master: retire dials.tutorial command (7d16ef5e)
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Tue, 27 Mar 2018 22:55:03 +0100 |
134 lines |
[git/dials] master: More Python3 and pytest conversion (3f82b64d)
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Tue, 27 Mar 2018 22:53:22 +0100 |
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[git/dials] master: Remove deprecated names from dials.util (18b798b6)
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Tue, 27 Mar 2018 22:14:27 +0100 |
134 lines |
[git/dials] master: remove dftbx, closes #525 (53eb1eb7)
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Tue, 27 Mar 2018 19:03:24 +0100 |
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[git/dials] master: Cleaning up file headers, adding print_function and sorting imports (2747eabd)
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Tue, 27 Mar 2018 18:37:10 +0100 |
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[git/dials] master: revert changes to dials.tutorial (8a0bb797)
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Tue, 27 Mar 2018 18:20:05 +0100 |
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[git/dials] master: Some Python3 conversion, #459. (3d8b0050)
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Tue, 27 Mar 2018 18:03:48 +0100 |
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[git/dials] master: Use absolute names for logging, fixes #510. (937315d8)
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Tue, 27 Mar 2018 16:56:00 +0100 |
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[git/dials_scratch] master: Cell constant histogram jiffy (4282690)
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Fri, 23 Mar 2018 13:20:13 +0000 |
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[git/dials_scratch] master: Clutter eliminate (8f68d3b)
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Fri, 23 Mar 2018 13:20:13 +0000 |
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[git/dials_scratch] master: Added experiment to plot kl divergence with increasing number of observations (6031612)
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Fri, 23 Mar 2018 11:52:11 +0000 |
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[git/dials_scratch] master: Updated tests (ab1508f)
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Fri, 23 Mar 2018 11:52:11 +0000 |
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[git/dials] master: Ensure vectors are the sample length (78a7ac88)
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Fri, 23 Mar 2018 11:35:49 +0000 |
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[git/dials_scratch] master: Cleaning out old code. (6abbd99)
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Thu, 22 Mar 2018 14:50:09 +0000 |
226 lines |
[git/dials_scratch] master: Faster intensity matching for targeted scaling and faster error calculation. (da4729b)
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Thu, 22 Mar 2018 13:51:57 +0000 |
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[git/dials_scratch] master: Rewriting script as class. (026122f)
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Thu, 22 Mar 2018 13:51:57 +0000 |
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[git/dials] master: fail with exit code if tutorial text generation fails (7896c974)
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Thu, 22 Mar 2018 10:06:06 +0000 |
112 lines |
[git/dials_scratch] master: Include option to output paired I's; also output scaled I correlation (534e3a5)
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Wed, 21 Mar 2018 15:12:24 +0000 |
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[git/dials_scratch] master: Fix output for scaling against target. (ff7ea79)
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Wed, 21 Mar 2018 13:39:29 +0000 |
197 lines |
[git/dials_scratch] master: More ronseal products - for evaluating serial crystallography tools: (419957c)
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Wed, 21 Mar 2018 11:49:15 +0000 |
256 lines |
[git/dials_scratch] master: Some suggestions for modest refactor (12c7358)
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Wed, 21 Mar 2018 09:27:03 +0000 |
157 lines |
[git/dials_scratch] master: Clean clutter (4df8858)
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Wed, 21 Mar 2018 09:12:24 +0000 |
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[git/dials_scratch] master: type => path (8d9c240)
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Wed, 21 Mar 2018 09:11:53 +0000 |
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[git/dials_scratch] master: Idiomatic constructor of fixed flex array (i.e. all same values) (5e2580e)
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Wed, 21 Mar 2018 09:03:48 +0000 |
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[git/dials_scratch] master: Move import since flex used elsewhere (8492869)
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Wed, 21 Mar 2018 08:58:16 +0000 |
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[git/dials_scratch] master: Add spaces where needed (ece4b47)
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Wed, 21 Mar 2018 08:48:51 +0000 |
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[git/dials_scratch] master: Code to allow scaling against calculated intensities. (f25f9b5)
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Wed, 21 Mar 2018 08:44:51 +0000 |
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[git/dials_scratch] master: Add reindexing input reflection (aa1db33)
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Tue, 20 Mar 2018 17:30:08 +0000 |
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[git/dials_scratch] master: Added a parameter to set max centroid distance in outlier rejection (4f4b7de)
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Tue, 20 Mar 2018 14:23:14 +0000 |
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[git/dials_scratch] master: Added logging (ba1b1d9)
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Tue, 20 Mar 2018 14:06:27 +0000 |
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[git/dials_scratch] master: Added some more plot stuff (45fd057)
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Tue, 20 Mar 2018 14:06:27 +0000 |
129 lines |
[git/dials_scratch] master: Added some more debug stuff (70cc884)
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Tue, 20 Mar 2018 14:06:27 +0000 |
107 lines |
[git/dials_scratch] master: Rename command prior to moving it into DIALS proper (75c79dd)
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Tue, 20 Mar 2018 12:14:21 +0000 |
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[git/dials_scratch] master: Comment out temp fix (9d3deee)
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Tue, 20 Mar 2018 11:53:13 +0000 |
205 lines |
[git/dials_scratch] master: Update predictions from input reflections (f1dc9d3)
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Tue, 20 Mar 2018 11:52:55 +0000 |
330 lines |
[git/dials_scratch] master: Add plots (2863be3)
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Tue, 20 Mar 2018 10:33:24 +0000 |
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[git/dials_scratch] master: Print out distance and variance from Ewald sphere (715e8b7)
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Tue, 20 Mar 2018 10:33:05 +0000 |
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[git/dials_scratch] master: Removed some old stuff (6180d25)
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Tue, 20 Mar 2018 09:56:55 +0000 |
119 lines |
[git/dials_scratch] master: Added some more output (83b7155)
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Tue, 20 Mar 2018 09:56:55 +0000 |
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[git/dials_scratch] master: TEMPORARY FIX (ab427d2)
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Tue, 20 Mar 2018 09:56:55 +0000 |
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[git/dials_scratch] master: Filter out spots with large centroid to prediction distances (c0d823a)
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Tue, 20 Mar 2018 09:56:55 +0000 |
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[git/dials_scratch] master: Added parameters for script (1f2b51f)
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Tue, 20 Mar 2018 09:56:55 +0000 |
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[git/dials_scratch] master: Added some comments (7ad58f2)
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Tue, 20 Mar 2018 09:56:55 +0000 |
423 lines |
[git/dials_scratch] master: Did a clean clutter (adc0990)
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Tue, 20 Mar 2018 09:56:55 +0000 |
59 lines |
[git/dials_scratch] master: Added simplex refiner and some more output (ff029d5)
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Tue, 20 Mar 2018 09:56:55 +0000 |
380 lines |
[git/dials_scratch] master: Tidying up script a bit (fc06b64)
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Tue, 20 Mar 2018 09:56:55 +0000 |
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[git/dials_scratch] master: Modify matching of reflections for targeted scaling. (d504aa5)
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Mon, 19 Mar 2018 14:40:44 +0000 |
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[git/dials] master: remove unused imports (b81ee54a)
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Mon, 19 Mar 2018 12:13:40 +0000 |
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[git/dials] master: convert and fix broken test (86261f21)
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Mon, 19 Mar 2018 12:10:55 +0000 |
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[git/dials] master: Some python3 conversion effort, #459. 235 files remain. (42fcf5ff)
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Mon, 19 Mar 2018 11:40:32 +0000 |
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[git/dials] master: retire dials.util.picklez (unused) (489a776a)
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Mon, 19 Mar 2018 11:32:24 +0000 |
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[git/dials] master: Skip unstable tests, #518 (700c9d30)
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Mon, 19 Mar 2018 10:28:03 +0000 |
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[git/dials] master: fix typo, missing context handler (0ba47a73)
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Mon, 19 Mar 2018 10:15:44 +0000 |
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[git/dials] master: futurize -1 except whitespace and print() changes (2fdd3cee)
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Mon, 19 Mar 2018 09:57:44 +0000 |
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[git/dials] master: apply -x, -y, -z symop to calculate CC for identity op (099ea55f)
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Fri, 16 Mar 2018 18:45:40 +0000 |
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[git/dials_scratch] master: Fix plotting when data range is cut. (b0db1eb)
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Fri, 16 Mar 2018 16:38:33 +0000 |
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[git/dials_scratch] master: Updates to initialisation of array model. (0f1395e)
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Fri, 16 Mar 2018 16:38:33 +0000 |
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[git/dials_scratch] master: Moved prediction to C++ (262cd6a)
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Fri, 16 Mar 2018 13:39:19 +0000 |
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[git/dials_scratch] master: Moved bbox calculation to c++ (2c539e4)
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Fri, 16 Mar 2018 13:39:19 +0000 |
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[git/dials_scratch] master: Moved mask calculation to C++ (1028bc5)
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Fri, 16 Mar 2018 13:39:19 +0000 |
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[git/dials_scratch] master: Improvements to array model stability. (0060980)
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Fri, 16 Mar 2018 12:34:47 +0000 |
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[git/dials_scratch] master: Moving a few utility calculations to cpp ext. (877f783)
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Fri, 16 Mar 2018 09:19:30 +0000 |
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[git/dials] master: feed the monster (fcbe8f15)
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Fri, 16 Mar 2018 08:58:48 +0000 |
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[git/dials] master: add scikit_learn dependency for cosym (8f854fb6)
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Fri, 16 Mar 2018 08:34:18 +0000 |
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[git/dials] master: add scipy dependency for new symmetry determination code (c99f8c2f)
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Fri, 16 Mar 2018 08:33:43 +0000 |
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[git/dials] master: move Resolutionizer.py from xia2 (dependency of new symmetry code) (29839a12)
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Fri, 16 Mar 2018 08:31:35 +0000 |
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[git/dials_scratch] master: Clean clutter (292b947)
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Fri, 16 Mar 2018 07:13:26 +0000 |
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[git/dials_scratch] master: Ronseal: does exactly what it says on the tin (fb3a51e)
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Fri, 16 Mar 2018 07:13:06 +0000 |
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[git/dials] master: new symmetry-determination tool based on pointless algorithms (a1a13837)
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Thu, 15 Mar 2018 18:24:40 +0000 |
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[git/dials_scratch] master: Filter out only indexed reflectins (19cb031)
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Thu, 15 Mar 2018 16:07:01 +0000 |
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[git/dials] master: use 'Agg' matplotlib backend to hopefully fix test (7160545b)
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Thu, 15 Mar 2018 15:52:28 +0000 |
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[git/dials] master: Add new command dials.cosym: implementation of algorithms described in Gildea, R.J. & Winter, G. (2018). Acta Cryst. D74, https://doi.org/10.1107/S2059798318002978 (01e35518)
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Thu, 15 Mar 2018 15:21:16 +0000 |
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[git/dials_scratch] master: Add missing header file. (f1de42e)
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Thu, 15 Mar 2018 13:00:18 +0000 |
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[git/dials_scratch] master: Missing file. (35a024e)
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Thu, 15 Mar 2018 12:56:35 +0000 |
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[git/dials_scratch] master: Moving sph harm calc to c++. (56d45ce)
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Thu, 15 Mar 2018 12:04:57 +0000 |
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[git/dials_scratch] master: Added crystal refiner and test (dbc87be)
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Thu, 15 Mar 2018 11:34:49 +0000 |
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[git/dials_scratch] master: Tidying up implementation and writing tests (1a91226)
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Thu, 15 Mar 2018 11:34:49 +0000 |
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[git/dials_scratch] master: Added tests for simple mosaicity model and derivatives. Also did a clean clutter (e55d2b3)
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Thu, 15 Mar 2018 11:34:49 +0000 |
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[git/dials_scratch] master: Test derivatives of crystal refinement (8e8c202)
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Thu, 15 Mar 2018 11:34:49 +0000 |
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[git/dials_scratch] master: Added test for ML optimization (a7dc539)
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Thu, 15 Mar 2018 11:34:49 +0000 |
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[git/dials_scratch] master: Changed S -> S/n (0cde423)
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Thu, 15 Mar 2018 11:34:49 +0000 |
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[git/dials_scratch] master: Added script to do stuff (6e38fa3)
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Thu, 15 Mar 2018 11:34:49 +0000 |
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[git/dials_scratch] master: Modifications to old code (dfc800d)
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Thu, 15 Mar 2018 11:34:49 +0000 |
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[git/dials_scratch] master: Removing redundant files (0c6c0a9)
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Thu, 15 Mar 2018 11:34:48 +0000 |
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[git/dials_scratch] master: Added test for first/second derivatives of profile maximum likelihood (a562a98)
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Thu, 15 Mar 2018 11:34:48 +0000 |
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[git/dials_scratch] master: Added test for crystal refinement (4e09847)
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Thu, 15 Mar 2018 11:34:48 +0000 |
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[git/dials_scratch] master: Updating names in plotting script. (2e6df81)
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Thu, 15 Mar 2018 10:36:42 +0000 |
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[git/dials] master: Disallow 'None' on find_spots max_spot_size parameter (8c29320a)
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Wed, 14 Mar 2018 14:13:56 +0000 |
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[git/dials] master: image_viewer: Fix mask display (2f6ca516)
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Wed, 14 Mar 2018 14:00:30 +0000 |
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[git/dials_scratch] master: Renaming of files and start of curvatures calculation. (aa38c15)
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Wed, 14 Mar 2018 10:12:35 +0000 |
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[git/dials] master: retire this copy of procrunner code. use import procrunner instead (7e3b7183)
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Mon, 12 Mar 2018 16:56:12 +0000 |
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[git/dials] master: I don't have to understand why a second 'import os' is needed? (b90476ea)
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Mon, 12 Mar 2018 16:55:02 +0000 |
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[git/dials] master: move to python package 'procrunner' (dce52e65)
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Mon, 12 Mar 2018 16:49:44 +0000 |
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[git/dials] master: remove dials.discover_better_experimental_model. Resolves #418 (88c2ba5c)
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Sun, 11 Mar 2018 10:49:50 +0000 |
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[git/dials] master: add Jinja2 dependency for dials.report (29eab9db)
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Sat, 10 Mar 2018 12:36:30 +0000 |
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[git/dials] tag 'v1.9.0' created
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Fri, 9 Mar 2018 12:50:57 +0000 |
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[git/dials] master: Some minor tweaks to the dials.image_viewer fixes (3ffd41e9)
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Fri, 9 Mar 2018 12:26:03 +0000 |
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[git/dials] master: dials.image_viewer refactoring (14523490)
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Thu, 8 Mar 2018 19:42:28 +0000 |
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[git/dials] master: Fix image_viewer bug where "Load Image" didn't work (2d59235b)
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Thu, 8 Mar 2018 18:35:34 +0000 |
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[git/dials_scratch] master: Adding use of refined error model to update variances and plotting script. (93c2ac5)
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Thu, 8 Mar 2018 17:20:41 +0000 |
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[git/dials_scratch] master: Added spot prediction, bbox calculation, mask calculation and integration to profile modelling script (8ccbf40)
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Thu, 8 Mar 2018 14:51:52 +0000 |
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[git/dials_scratch] master: Reorganising of error model code. (98dd87a)
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Thu, 8 Mar 2018 13:56:09 +0000 |
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[git/dials_scratch] master: Added profile and crystal refiner to top level script doing macro cycles of both (d26afa6)
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Wed, 7 Mar 2018 17:01:31 +0000 |
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[git/dials_scratch] master: Added improved initial covariance estimation to reduce number of iterations needed. (286a535)
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Wed, 7 Mar 2018 17:01:31 +0000 |
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[git/dials_scratch] master: Added fisher scoring function to compute parameter estimates (5f9c393)
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Wed, 7 Mar 2018 17:01:31 +0000 |
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[git/dials_scratch] master: Added fisher information function (f53ae80)
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Wed, 7 Mar 2018 17:01:31 +0000 |
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[git/dials_scratch] master: Added line search and stuff (9cd0954)
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Wed, 7 Mar 2018 17:01:31 +0000 |
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[git/dials_scratch] master: Moved parameterisation to its own file along with profile model. Tidying a bit of stuff (0a384ff)
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Wed, 7 Mar 2018 17:01:31 +0000 |
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[git/dials_scratch] master: Trying to tidy some bits up (bb73538)
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Wed, 7 Mar 2018 17:01:31 +0000 |
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[git/dials_scratch] master: Put profile refiner into its own file (3f5b0c7)
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Wed, 7 Mar 2018 17:01:31 +0000 |
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[git/dials_scratch] master: Tutorial html and figures, temporarily placed here. (56bebc1)
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DIALS Scratch commit |
Tue, 6 Mar 2018 17:22:54 +0000 |
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[git/dials_scratch] master: Adding more useful warnings. (f78ae95)
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DIALS Scratch commit |
Tue, 6 Mar 2018 16:24:18 +0000 |
646 lines |
[git/dials_scratch] master: Reworking Ih_table, implementing flags and renaming. (a1684ad)
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DIALS Scratch commit |
Tue, 6 Mar 2018 11:31:39 +0000 |
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[git/dials_scratch] master: Updating outliers plotting and tests. (e8e87f2)
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DIALS Scratch commit |
Tue, 6 Mar 2018 11:31:39 +0000 |
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[git/dials] master: Addition of flags for use in scaling; outliers and excluded reflections. (06727c3c)
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Tue, 6 Mar 2018 11:27:23 +0000 |
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[git/dials] master: Add alternate mode to dials.merge_cbf that reads the image array directly from the cbf rather than via the imageset. This allows the program to work for multi-panel detectors (33e10b1e)
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DIALS commit |
Sun, 4 Mar 2018 14:43:55 +0000 |
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[git/dials_scratch] master: Did clean clutter. Also trying log cholesky parameterisation (bedbaf3)
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DIALS Scratch commit |
Fri, 2 Mar 2018 18:59:28 +0000 |
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[git/dials] master: HumourError: Please replace humour (294f3f3d)
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DIALS commit |
Fri, 2 Mar 2018 18:53:21 +0000 |
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[git/dials_scratch] master: Added some interface changes (44344d3)
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Fri, 2 Mar 2018 15:31:23 +0000 |
573 lines |
[git/dials_scratch] master: Added some code to test centre of mass on ewald sphere of pototo shaped rlp (3c2ba86)
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DIALS Scratch commit |
Fri, 2 Mar 2018 15:31:23 +0000 |
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[git/dials_scratch] master: Added classes to compute derivatives and a new test to ensure derivatives are correct (870fcec)
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DIALS Scratch commit |
Fri, 2 Mar 2018 15:31:23 +0000 |
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[git/dials_scratch] master: Added some tests for parameter estimation and derivatices (349bfe1)
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Fri, 2 Mar 2018 15:31:23 +0000 |
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[git/dials] master: reduce randomness in test; run on specific sg/cell volume combinations; fixes #515 (e41b604f)
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DIALS commit |
Fri, 2 Mar 2018 09:12:40 +0000 |
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[git/dials] master: Defend against users getting a bit too hacky with vi and an experiments.json (fe5afc79)
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DIALS commit |
Thu, 1 Mar 2018 21:26:15 +0000 |
90 lines |