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[git/dials] master: 1.2.5 released (d3ef762)
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DIALS Commit via DLS Jenkins |
Thu, 9 Jun 2016 08:47:49 +0100 |
130 lines |
[git/dials] master: Add isoform refinement to the stills indexer. (fff3ca5)
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Mon, 13 Jun 2016 15:56:49 -0700 |
379 lines |
[git/dials] master: Add mask=filename to dials.image_viewer for easy viewing of dials mask files. (9828fc8)
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Tue, 7 Jun 2016 16:32:43 -0700 |
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[git/dials] master: Add option to only display integrated reflections (630e22c)
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Fri, 10 Jun 2016 10:57:08 +0100 |
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[git/dials] master: Add option to only show integration shoeboxes (b09455e)
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Fri, 10 Jun 2016 13:30:52 +0100 |
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[git/dials] master: Add refinement paper to publications.html (910155c)
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Thu, 9 Jun 2016 15:34:32 +0100 |
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[git/dials] master: Added gain to spot finding (e6e2c52)
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Fri, 17 Jun 2016 13:26:25 +0100 |
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[git/dials] master: Allow indexing for data imported from XDS SPOT.XDS (f484810)
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Wed, 15 Jun 2016 10:11:08 +0100 |
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[git/dials] master: Allow setting frames; helps with datablock.json (540acf4)
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Tue, 14 Jun 2016 08:15:40 +0100 |
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[git/dials] master: Allow z-min z-max in rlv; fixes #145 (bbe3278)
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Wed, 8 Jun 2016 11:32:52 +0100 |
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[git/dials] master: Also changed moslfm to plane here (1d1cdfa)
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Tue, 28 Jun 2016 13:16:11 +0100 |
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[git/dials] master: avoid double call of _get_flex_image() on loading of new image (039b3c6)
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Fri, 3 Jun 2016 16:28:24 +0100 |
285 lines |
[git/dials] master: Bug fix (4a24459)
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Wed, 8 Jun 2016 14:37:10 +0100 |
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[git/dials] master: bug fix for display of unindexed reflections from integrated.pickle (8c39ec3)
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Tue, 21 Jun 2016 15:05:42 -0500 |
95 lines |
[git/dials] master: cache frame number for scan-varying paramterisations to avoid composing more than once (5bfdaa6)
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Tue, 28 Jun 2016 14:21:43 +0100 |
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[git/dials] master: Catch no reflection in input and raise Sorry (fda54e6)
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Tue, 14 Jun 2016 12:05:39 +0100 |
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[git/dials] master: Changed outlier name from mosflm to plane as suggested by reviewer (f3aab5b)
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Tue, 28 Jun 2016 13:16:11 +0100 |
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[git/dials] master: Check make exit codes and stop on error (6d0366d)
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Mon, 27 Jun 2016 10:31:27 +0100 |
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[git/dials] master: Clean code some; add summary information; FIXME should re-use resolution array (bf14998)
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Mon, 13 Jun 2016 15:52:03 +0100 |
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[git/dials] master: consistent use of EOF vs eof in heredocs in documentation (02edfc4)
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Fri, 24 Jun 2016 15:30:31 -0500 |
205 lines |
[git/dials] master: correction for revision e584ac9 - the method exists in Pillow, it just raises Exception (ed46252)
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Wed, 8 Jun 2016 15:20:47 +0100 |
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[git/dials] master: defluff installer, fixes #149 (937a231)
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Wed, 8 Jun 2016 10:55:11 +0100 |
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[git/dials] master: dials.export: change default output name hklout -> integrated (52041f9)
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Fri, 24 Jun 2016 16:08:24 -0500 |
193 lines |
[git/dials] master: dials.stills_process: accept json files, not just raw images. Allows using dials.import with overrides like mosflm_beam_center. (68a5094)
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Wed, 29 Jun 2016 07:51:23 -0700 |
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[git/dials] master: Did clean cluter (c4a53af)
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Fri, 17 Jun 2016 13:39:52 +0100 |
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[git/dials] master: Documentation for the distl/dials apache spotfinder server. (13963a7)
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Fri, 10 Jun 2016 09:25:54 -0700 |
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[git/dials] master: Exclude further directories from installer (b7ad223)
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Thu, 9 Jun 2016 11:17:33 +0100 |
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[git/dials] master: Expose hard-coded parameters for stills indexing: (3f9c49d)
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Tue, 28 Jun 2016 22:12:48 -0700 |
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[git/dials] master: Fail test if dials.import fails (d59f9ff)
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Mon, 27 Jun 2016 16:57:17 +0100 |
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[git/dials] master: Feedback from DESY: make workshop proceedings more visible by putting them in their own page, not 'Links'. Move Framework Report to Publications (01bb483)
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Tue, 21 Jun 2016 11:35:30 +0100 |
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[git/dials] master: fix dials.background (411daeb)
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Thu, 23 Jun 2016 11:44:37 -0500 |
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[git/dials] master: fix documentation (ff5cb2e)
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Mon, 27 Jun 2016 12:11:34 +0100 |
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[git/dials] master: Fix documnentation (a4a89ec)
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Mon, 27 Jun 2016 11:02:54 +0100 |
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[git/dials] master: Fix for #155 view predictions in RLV (e8dfddb)
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Mon, 27 Jun 2016 11:37:56 +0100 |
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[git/dials] master: fix for #156 (62dbb4a)
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Fri, 17 Jun 2016 10:13:49 +0100 |
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[git/dials] master: Fix ice ring filtering for blank images (f44b64c)
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Fri, 24 Jun 2016 09:31:10 +0100 |
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[git/dials] master: Fix indentation of comments (d792fa0)
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Fri, 17 Jun 2016 13:44:57 +0100 |
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[git/dials] master: fix README (1606df6)
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Wed, 8 Jun 2016 17:23:38 +0100 |
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[git/dials] master: fix some sphinx warnings (3db12e0)
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Mon, 27 Jun 2016 12:42:15 +0100 |
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[git/dials] master: Fixed a bug in idials (c0bd4e5)
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Wed, 1 Jun 2016 10:14:08 +0100 |
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[git/dials] master: Fixed bug (7aab8e2)
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Mon, 27 Jun 2016 11:21:13 +0100 |
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[git/dials] master: Fixed for HDF5 files in multiple jobs and processes. Need to make sure file is closed because of fork behaviour in python multiprocessing. Fixes #144 (b19510e)
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Thu, 2 Jun 2016 15:50:04 +0100 |
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[git/dials] master: Fixed test (d5670f6)
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Mon, 27 Jun 2016 16:56:06 +0100 |
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[git/dials] master: fixes #166 (bug probably introduced by 039b3c679fd5a7c5e5c78fdacc3e9a805cb6d65c) (a04434d)
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Wed, 29 Jun 2016 10:35:42 +0100 |
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[git/dials] master: Fixes for plotting integrated experiments and reflections when using multi-panel detector e.g. I23 (518d136)
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Fri, 10 Jun 2016 09:30:33 +0100 |
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[git/dials] master: FIXME for single image integration (6e40dc6)
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Thu, 30 Jun 2016 15:46:23 +0100 |
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[git/dials] master: FIXME; I think yes (7c4ebcd)
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Fri, 10 Jun 2016 16:08:04 +0100 |
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[git/dials] master: Follow on from 6d7cd98, also use C++ helper class in scan-varying parameterisations for small but significant time savings (c53f070)
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Wed, 29 Jun 2016 12:28:16 +0100 |
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[git/dials] master: For stills integration, remove reflections with at least one bad foreground pixel. (e73416d)
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Mon, 13 Jun 2016 11:39:58 -0700 |
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[git/dials] master: Further to #166: Only update view if any value has changed. Means you can still tab/click through the parameters without freezing (5ca25c9)
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Wed, 29 Jun 2016 10:44:08 +0100 |
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[git/dials] master: image_viewer optimisations when no spots to display (28a845f)
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Fri, 3 Jun 2016 16:41:35 +0100 |
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[git/dials] master: Improved error message: although dmin is the variable name, d_min is what the user sees via phil (a7945b3)
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Tue, 28 Jun 2016 11:05:37 +0100 |
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[git/dials] master: Is this a bug? (4b993a2)
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Wed, 8 Jun 2016 11:12:34 +0100 |
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[git/dials] master: Key control of view; use up/down/left/right for big moves; shift+same for finer control (0.1*scale); fixes #142 (1b1b82b)
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Wed, 8 Jun 2016 10:27:14 +0100 |
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[git/dials] master: missing print >> out (549568d)
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Mon, 27 Jun 2016 12:11:34 +0100 |
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[git/dials] master: Missing Sorry() imports lead to hilarious tracebacks. (6cc2028)
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Tue, 21 Jun 2016 09:22:16 +0100 |
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[git/dials] master: more debug output for find_max_cell (d37da74)
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Thu, 23 Jun 2016 14:39:56 +0100 |
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[git/dials] master: more refactoring (07cba11)
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Fri, 3 Jun 2016 15:26:48 +0100 |
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[git/dials] master: more refactoring (14e1c16)
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Fri, 3 Jun 2016 15:26:48 +0100 |
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[git/dials] master: More sensible caching and return of derivatives for multi-state parameterisations; also clean up dead code (7b3d9ac)
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Mon, 27 Jun 2016 16:40:22 +0100 |
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[git/dials] master: More warnings that should probably be debug (5a4a1fd)
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Wed, 8 Jun 2016 14:46:21 +0100 |
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[git/dials] master: move a shared method to a base class (6e0d1e4)
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Fri, 3 Jun 2016 15:26:48 +0100 |
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[git/dials] master: Move background to dials.background; philling (71005cf)
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Mon, 13 Jun 2016 15:22:56 +0100 |
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[git/dials] master: Move sim_mx data to dials_regression. Update tests. Suggested change for #149 (e012b64)
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Wed, 8 Jun 2016 11:25:22 +0100 |
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[git/dials] master: move workshops page to the correct place; add more links and contact information (b4e6001)
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Tue, 21 Jun 2016 12:08:21 +0100 |
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[git/dials] master: Moved controller part of idials to util/idials so it can be incorporated into GUI (c0ea570)
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Wed, 1 Jun 2016 13:15:55 +0100 |
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[git/dials] master: Moved import of scipy so that it's always before any cctbx modues (90d437a)
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Wed, 8 Jun 2016 15:17:07 +0100 |
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[git/dials] master: no need to recalculate bin tt values as already calculated by histogram code (27623bd)
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Thu, 23 Jun 2016 11:56:39 -0500 |
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[git/dials] master: Now _get_gradients_core is the same in all derived classes, so move it to the base class get_gradients method (84a99bf)
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Fri, 3 Jun 2016 15:26:48 +0100 |
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[git/dials] master: option to generate plot of background intensity vs resolution (c7a3315)
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Thu, 30 Jun 2016 11:29:13 +0100 |
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[git/dials] master: P1 is a special case (8fce7f0)
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Fri, 24 Jun 2016 06:50:14 -0500 |
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[git/dials] master: Potential workaround for group frames that have zero distance. @rjgildea Does this work now? (6fcb0cb)
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Tue, 28 Jun 2016 19:02:55 +0100 |
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[git/dials] master: print out auto value of mp_chunksize (c6df3b6)
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Wed, 8 Jun 2016 10:28:56 +0100 |
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[git/dials] master: print table of bravais lattice to space groups in dials.refine_bravais_settings (0c6f8e7)
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Thu, 23 Jun 2016 22:51:51 -0500 |
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[git/dials] master: Propagate stdout/stderr so that GUI can intercept. Also make running command asynchronous, with mutex locks to ensure that nothing gets messed up. (3930e61)
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Thu, 2 Jun 2016 13:41:28 +0100 |
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[git/dials] master: Putative fix for #107; involves not showing masks if sum_images != 1 (89e0a64)
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Wed, 8 Jun 2016 14:31:47 +0100 |
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[git/dials] master: refactoring to improve code reusability (a6acda9)
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Fri, 3 Jun 2016 15:26:48 +0100 |
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[git/dials] master: remove unused parameter (58279c2)
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Mon, 27 Jun 2016 12:11:34 +0100 |
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[git/dials] master: Removed absolute paths in state file. (1d9dee7)
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Wed, 1 Jun 2016 14:11:17 +0100 |
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[git/dials] master: removing commented and no longer needed test print (e392d98)
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Wed, 1 Jun 2016 13:50:31 +0100 |
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[git/dials] master: Sanity check: closes #165 (15936e1)
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Tue, 28 Jun 2016 11:03:39 +0100 |
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[git/dials] master: Say what we are using (08176a5)
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Fri, 24 Jun 2016 12:23:31 +0100 |
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[git/dials] master: Send to debug instead to suppress excessive number of these warnings appearing in the user log (c29c10e)
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Wed, 8 Jun 2016 13:58:44 +0100 |
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[git/dials] master: Set chunksize to auto; fixes #150 (5cbe9ac)
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Wed, 8 Jun 2016 08:27:38 +0100 |
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[git/dials] master: Setting reflections_per_degree may be beneficial for large scan-varying refinement jobs to reduce memory use. However, until now there has been a memory spike at the end of the job when prediction is performed for all indexed reflections. This is now reduced somewhat by not caching derivatives in the reflection table in this case, as we only need them during refinement anyway. (b826caa)
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Tue, 28 Jun 2016 15:56:58 +0100 |
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[git/dials] master: simpler to use libtbx.python -m pip install (71311a5)
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Wed, 8 Jun 2016 09:46:14 +0100 |
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[git/dials] master: support for viewing files imported from xds in reciprocal lattice viewer (786c3a7)
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Fri, 24 Jun 2016 10:18:03 -0500 |
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[git/dials] master: Tidied up import a bit - was previously difficult to see what was going on. Added some code to transform stills to sweeps if oscillation is given. (e6510c8)
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Thu, 9 Jun 2016 17:09:18 +0100 |
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[git/dials] master: tidying up, improving docstrings etc. after refactoring (d1ff8c2)
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Fri, 3 Jun 2016 15:26:48 +0100 |
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[git/dials] master: Tool to generate histogram of #spots in resolution shells, scaled as 1/d**2 (6a3e174)
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Fri, 17 Jun 2016 13:51:11 +0100 |
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[git/dials] master: update multi-lattice tutorial to reflect current best usage (3949ef0)
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Thu, 23 Jun 2016 22:55:39 -0500 |
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[git/dials] master: Update parallax correction if geometry is updated. Fixes #163 (c098a69)
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Mon, 27 Jun 2016 11:58:29 +0100 |
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[git/dials] master: use jinja2 templates to create html reports (b7ed590)
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Fri, 3 Jun 2016 17:06:05 +0100 |
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[git/dials] master: Use new flex.weighted_histogram; gives *identical* results :)@ (dfabf94)
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Tue, 14 Jun 2016 09:20:16 +0100 |
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[git/dials] master: Use None to signify null derivatives and short circuit calculations involving these (9590380)
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Fri, 3 Jun 2016 15:26:48 +0100 |
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[git/dials] master: Use sparse storage in Gaussian smoother, where many elts are expected to be 0.0 (51d0733)
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Fri, 3 Jun 2016 15:26:48 +0100 |
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[git/dials] master: with a little more generic variable naming the loops over parameterisations can be shared between scans and stills type parameterisations and hence moved to the shared base (5cc562f)
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Fri, 3 Jun 2016 15:26:48 +0100 |
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[git/dials_scratch] master: fix for interface change (178bcca)
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DIALS Scratch Commit via DLS Jenkins |
Fri, 3 Jun 2016 15:50:06 +0100 |
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