I may be wrong but seems like this is a python error complaining about expecting 6 columns but getting 5.
What are your index.txt, acqparams.txt and t-dim size of input .nii.gz?
Cheers,
Danny
________________________________________
From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of SUBSCRIBE FSL Jay <[log in to unmask]>
Sent: Wednesday, February 20, 2019 1:39 AM
To: [log in to unmask]
Subject: Re: [FSL] FSL 6.0.0 install error (MAC OS)
Yes, despite installation failure, i have tried using eddy_quad and i get the following error. I am pretty sure that the installation needs to be fixed (based on the error posted in the beginning of this thread). Please let me know if there is a work around for this issue.
==================================
eddy_quad eddy_corrected_data_ivmc1 -idx /Volumes/Promise_RAID/Tina_FOCUS/scripts/index.txt -par /Volumes/Promise_RAID/Tina_FOCUS/scripts/acqparams.txt -m my_hifi_b0_brain_mask -b dtiPA.bval
Traceback (most recent call last):
File "/usr/local/fsl/bin/eddy_quad", line 52, in <module>
main(args.eddyBase, args.eddyIdx, args.eddyParams, args.mask, args.bvals, args.bvecs, args.output_dir, args.field, args.slspec, args.verbose)
File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.6/site-packages/eddy_qc/QUAD/quad.py", line 70, in main
eddyPara = np.genfromtxt(eddyParams, dtype=float, delimiter=' ')
File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.6/site-packages/numpy/lib/npyio.py", line 2014, in genfromtxt
raise ValueError(errmsg)
ValueError: Some errors were detected !
Line #2 (got 5 columns instead of 6)
==================================
Best wishes
Jay
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