Hi Leonor,
how many bvalues and how many phase encoding directions does your datasets have?
Cheers,
Matteo
> On 13 Feb 2019, at 09:50, Leonor Agan <[log in to unmask]> wrote:
>
> Hi Matteo,
>
> Thanks for that! I did just that but now I am getting the following error:
>
> ...FSL-6.0.0/fsl/fslpython/envs/fslpython/lib/python3.6/site-packages/eddy_qc/SQUAD/squad_update.py", line 104, in main
>
> ol_colour_idx[1+sData['data_no_shells']:][(common_pe[:,1])] = (np.clip(np.floor((np.array(sData['qc_outliers_pe'])[common_pe[:,1]]-ol_avg[1+sData['data_no_shells']+common_pe[:,0]])/ol_std[1+sData['data_no_shells']+common_pe[:,0]]),0,2)).astype(int)
>
> IndexError: index 1 is out of bounds for axis 1 with size 1
>
> I don't know what's causing this error. Any help is much appreciated.
>
> Thank you!
> Leonor
>
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