Hello,
I am no sure how to turn off MacPorts; the only thing I can think of is to remove the /opt/local from my path?
I commented out this line in my ~/.bash_profile: 'export PATH=/opt/local/bin:/opt/local/sbin:$PATH'
Now:
bash-3.2$ echo $PATH
/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin
The error still happens. I'm not sure that it's a problem with OSX10.11 specifically. This same error occurred when I upgraded from OSX10.9 to OSX10.10. I was able to roll my machine back to OSX10.9 to finish what I was working on at the time.
Thank you again,
Keith Hamilton
Graduate Student
Liang Tong Lab
Columbia University
New York, NY
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