Hi Eugene,
I used the command (below) you suggested and hope you don’t mind, but am sending you a screen shot of the output via your email.
The images don't line up well and seem not well registered. Although, they are the same dimension.
Flirt –ref reg/standard filtered_func_data –out filtered_func_data_MNI –applywarp –init reg/example_func2standard.mat –interp trilinear datatype float
Suggestions?
Thank you,
Varina
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