Steve,
I guess my main question is where do I find a legend for the label #'s used by the FSL atlases. I
am familiar w/ the Wakana atlas reference but not w/ your numbering scheme. As far as I can tell
the URL below does not contain this info.
Thanks again,
Tal.
On Fri, 28 Sep 2007 08:54:32 +0100, Steve Smith <[log in to unmask]> wrote:
>Hi - please see:
>http://www.fmrib.ox.ac.uk/fsl/fslview/atlas-descriptions.html#wm
>
>The two atlases are created in slightly different ways - one via
>manual segmentation of averaged tensor maps and the other by
>averaging across subjects single-subject tractography outputs. I
>would look carefully at both and decide which (or both) to use to
>help you report your results. You probably also want to consult more
>detailed atlas books such as Mori's excellent atlas.
>
>Cheers.
>
>
>
>On 27 Sep 2007, at 16:15, Tal Herbsman wrote:
>
>> Hi folks,
>> I am at the data analysis stage of a TBSS/VBM study. I have areas
>> of FA difference. Essentially I
>> report the MNI152 coordinate of the brightest voxel in a cluster
>> and want to associate it w/ the
>> most likely white matter tract it belongs to.
>>
>> How do I use the hopkins atlases? Is there a reference for what
>> each label #'s corresponding
>> structure? Which of the various JHU files is appropriate?
>>
>> Thanks much,
>> Tal
>>
>>
>>
>> Tal Herbsman, MD
>>
>> Department of Psychiatry
>> Medical University of South Carolina
>> 67 President Street, 5 South
>> Charleston, SC 29425
>>
>> Pager: (843) 792-2123 #15493
>
>
>------------------------------------------------------------------------
>---
>Stephen M. Smith, Professor of Biomedical Engineering
>Associate Director, Oxford University FMRIB Centre
>
>FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>+44 (0) 1865 222726 (fax 222717)
>[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>------------------------------------------------------------------------
>---
>===========================================================
==============
|