If you make or save text files on a windows PC, they are very
unlikely to work with FSL. (Windows has a different way of
representing carriage returns). If you make them on a Unix-based
system, all should be well.
T
On 31 Aug 2007, at 10:58, jonathan bosse wrote:
> I am working with a windows pc, I used to look at my bvecs under
> Windows (fsl 3.3) and now I'm trying to create from VMwarePlayer
> (fsl 4.0). (it was for the bvecs of the fsl 3.3 feeds, I made all
> my bvecs starting from this text file and the others I used to work
> with came from Mriconvert so I didn't really create them).
>
>
>> From: Tim Behrens <[log in to unmask]>
>> Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
>> To: [log in to unmask]
>> Subject: Re: [FSL] bvecs, bvals Problem
>> Date: Fri, 31 Aug 2007 10:39:41 +0100
>>
>> Are you looking at/making your bvecs on a windows PC?
>>
>>
>> On 31 Aug 2007, at 09:46, jonathan bosse wrote:
>>
>>> Sorry,
>>> I don't know what i is and didn't find it on the web site
>>> (.profile file) .
>>> I installed it with fsl_installer and it seem to work (wih some
>>> data), in fact there is only one error message when Irun fsl :
>>> /usr/local/fsl/etc/fslconf/fslmachtype.sh: line 26: gcc: command
>>> not found
>>> but it seem to work very well.
>>> my problem is that I couldn't create my own bvecs (i think it is,
>>> i had the same problem with fsl 3.3)
>>> is there something special to do when one write such a text file
>>> (at the end of the ine for exemple ?? I type enter). When I
>>> opened some bvecs I could see that there is some character like
>>> a square at the end of each file..is there a special format ?
>>>
>>>> From: Steve Smith <[log in to unmask]>
>>>> Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
>>>> To: [log in to unmask]
>>>> Subject: Re: [FSL] bvecs, bvals Problem
>>>> Date: Fri, 31 Aug 2007 08:50:02 +0100
>>>>
>>>> Hi - this suggests that you haven't setup FSL correctly -
>>>> please see the FSL download and installation instructions,
>>>> including how to setup your .profile (etc) files.
>>>> Cheers.
>>>>
>>>>
>>>> On 31 Aug 2007, at 08:47, jonathan bosse wrote:
>>>>
>>>>> Hi,
>>>>> thanks for the reply, but when I type bedpostx_datacheck it's
>>>>> written : command not found.
>>>>> But when I goes to fsl/bin there is a programm called
>>>>> bedpostx_datacheck.
>>>>>
>>>>>
>>>>>> From: Tim Behrens <[log in to unmask]>
>>>>>> Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
>>>>>> To: [log in to unmask]
>>>>>> Subject: Re: [FSL] bvecs, bvals Problem
>>>>>> Date: Thu, 30 Aug 2007 17:46:58 +0100
>>>>>>
>>>>>> can you run bedpostx_datacheck on your input directory please
>>>>>>
>>>>>> Thanks
>>>>>>
>>>>>> Tim
>>>>>> On 30 Aug 2007, at 17:43, jonathan bosse wrote:
>>>>>>
>>>>>>> Hello,
>>>>>>> I've got a problem : when I made DTIFIT reconstruct
>>>>>>> diffusion tensors I got this error message :
>>>>>>> errors : terminate called after throwing an instance of
>>>>>>> 'NEWMAT :: ProgramException'
>>>>>>> Ithink it's because my bvecs and bvals are "false" (they
>>>>>>> are very simple, it's just a test) Idon't manage to make
>>>>>>> my own bvecs and bvals Is threre something special to do
>>>>>>> with this text file ??
>>>>>>> I only could start from this in the feeds and change it but
>>>>>>> I can't create text file without problem .
>>>>>>>
>>>>>>> ________________________________________________________________
>>>>>>> _
>>>>>>> Gagnez des pc Windows Vista avec Live.com http://www.image-
>>>>>>> addict.fr/
>>>>>
>>>>> _________________________________________________________________
>>>>> Découvrez le Blog heroic Fantaisy d'Eragon! http://eragon-
>>>>> heroic- fantasy.spaces.live.com/
>>>>
>>>>
>>>> -------------------------------------------------------------------
>>>> -- --- ---
>>>> Stephen M. Smith, Professor of Biomedical Engineering
>>>> Associate Director, Oxford University FMRIB Centre
>>>>
>>>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>>>> +44 (0) 1865 222726 (fax 222717)
>>>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>>>> -------------------------------------------------------------------
>>>> -- --- ---
>>>
>>> _________________________________________________________________
>>> Gagnez des pc Windows Vista avec Live.com http://www.image-
>>> addict.fr/
>
> _________________________________________________________________
> Découvrez le Blog heroic Fantaisy d'Eragon! http://eragon-heroic-
> fantasy.spaces.live.com/
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