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If you make or save text files on a windows PC, they are very unlikely to work with FSL. (Windows has a different way of representing carriage returns). If you make them on a Unix-based system, all should be well. T On 31 Aug 2007, at 10:58, jonathan bosse wrote: > I am working with a windows pc, I used to look at my bvecs under > Windows (fsl 3.3) and now I'm trying to create from VMwarePlayer > (fsl 4.0). (it was for the bvecs of the fsl 3.3 feeds, I made all > my bvecs starting from this text file and the others I used to work > with came from Mriconvert so I didn't really create them). > > >> From: Tim Behrens <[log in to unmask]> >> Reply-To: FSL - FMRIB's Software Library <[log in to unmask]> >> To: [log in to unmask] >> Subject: Re: [FSL] bvecs, bvals Problem >> Date: Fri, 31 Aug 2007 10:39:41 +0100 >> >> Are you looking at/making your bvecs on a windows PC? >> >> >> On 31 Aug 2007, at 09:46, jonathan bosse wrote: >> >>> Sorry, >>> I don't know what i is and didn't find it on the web site >>> (.profile file) . >>> I installed it with fsl_installer and it seem to work (wih some >>> data), in fact there is only one error message when Irun fsl : >>> /usr/local/fsl/etc/fslconf/fslmachtype.sh: line 26: gcc: command >>> not found >>> but it seem to work very well. >>> my problem is that I couldn't create my own bvecs (i think it is, >>> i had the same problem with fsl 3.3) >>> is there something special to do when one write such a text file >>> (at the end of the ine for exemple ?? I type enter). When I >>> opened some bvecs I could see that there is some character like >>> a square at the end of each file..is there a special format ? >>> >>>> From: Steve Smith <[log in to unmask]> >>>> Reply-To: FSL - FMRIB's Software Library <[log in to unmask]> >>>> To: [log in to unmask] >>>> Subject: Re: [FSL] bvecs, bvals Problem >>>> Date: Fri, 31 Aug 2007 08:50:02 +0100 >>>> >>>> Hi - this suggests that you haven't setup FSL correctly - >>>> please see the FSL download and installation instructions, >>>> including how to setup your .profile (etc) files. >>>> Cheers. >>>> >>>> >>>> On 31 Aug 2007, at 08:47, jonathan bosse wrote: >>>> >>>>> Hi, >>>>> thanks for the reply, but when I type bedpostx_datacheck it's >>>>> written : command not found. >>>>> But when I goes to fsl/bin there is a programm called >>>>> bedpostx_datacheck. >>>>> >>>>> >>>>>> From: Tim Behrens <[log in to unmask]> >>>>>> Reply-To: FSL - FMRIB's Software Library <[log in to unmask]> >>>>>> To: [log in to unmask] >>>>>> Subject: Re: [FSL] bvecs, bvals Problem >>>>>> Date: Thu, 30 Aug 2007 17:46:58 +0100 >>>>>> >>>>>> can you run bedpostx_datacheck on your input directory please >>>>>> >>>>>> Thanks >>>>>> >>>>>> Tim >>>>>> On 30 Aug 2007, at 17:43, jonathan bosse wrote: >>>>>> >>>>>>> Hello, >>>>>>> I've got a problem : when I made DTIFIT reconstruct >>>>>>> diffusion tensors I got this error message : >>>>>>> errors : terminate called after throwing an instance of >>>>>>> 'NEWMAT :: ProgramException' >>>>>>> Ithink it's because my bvecs and bvals are "false" (they >>>>>>> are very simple, it's just a test) Idon't manage to make >>>>>>> my own bvecs and bvals Is threre something special to do >>>>>>> with this text file ?? >>>>>>> I only could start from this in the feeds and change it but >>>>>>> I can't create text file without problem . >>>>>>> >>>>>>> ________________________________________________________________ >>>>>>> _ >>>>>>> Gagnez des pc Windows Vista avec Live.com http://www.image- >>>>>>> addict.fr/ >>>>> >>>>> _________________________________________________________________ >>>>> Découvrez le Blog heroic Fantaisy d'Eragon! http://eragon- >>>>> heroic- fantasy.spaces.live.com/ >>>> >>>> >>>> ------------------------------------------------------------------- >>>> -- --- --- >>>> Stephen M. Smith, Professor of Biomedical Engineering >>>> Associate Director, Oxford University FMRIB Centre >>>> >>>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK >>>> +44 (0) 1865 222726 (fax 222717) >>>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve >>>> ------------------------------------------------------------------- >>>> -- --- --- >>> >>> _________________________________________________________________ >>> Gagnez des pc Windows Vista avec Live.com http://www.image- >>> addict.fr/ > > _________________________________________________________________ > Découvrez le Blog heroic Fantaisy d'Eragon! http://eragon-heroic- > fantasy.spaces.live.com/