Hi - the label names appear in the atlas widget when you turn it on
in FSLView - or you can look inside the relevant XML file in $FSLDIR/
data/atlases.
Cheers.
On 28 Sep 2007, at 13:21, Tal Herbsman wrote:
> Steve,
> I guess my main question is where do I find a legend for the label
> #'s used by the FSL atlases. I
> am familiar w/ the Wakana atlas reference but not w/ your numbering
> scheme. As far as I can tell
> the URL below does not contain this info.
>
> Thanks again,
> Tal.
>
>
>
> On Fri, 28 Sep 2007 08:54:32 +0100, Steve Smith
> <[log in to unmask]> wrote:
>
>> Hi - please see:
>> http://www.fmrib.ox.ac.uk/fsl/fslview/atlas-descriptions.html#wm
>>
>> The two atlases are created in slightly different ways - one via
>> manual segmentation of averaged tensor maps and the other by
>> averaging across subjects single-subject tractography outputs. I
>> would look carefully at both and decide which (or both) to use to
>> help you report your results. You probably also want to consult more
>> detailed atlas books such as Mori's excellent atlas.
>>
>> Cheers.
>>
>>
>>
>> On 27 Sep 2007, at 16:15, Tal Herbsman wrote:
>>
>>> Hi folks,
>>> I am at the data analysis stage of a TBSS/VBM study. I have areas
>>> of FA difference. Essentially I
>>> report the MNI152 coordinate of the brightest voxel in a cluster
>>> and want to associate it w/ the
>>> most likely white matter tract it belongs to.
>>>
>>> How do I use the hopkins atlases? Is there a reference for what
>>> each label #'s corresponding
>>> structure? Which of the various JHU files is appropriate?
>>>
>>> Thanks much,
>>> Tal
>>>
>>>
>>>
>>> Tal Herbsman, MD
>>>
>>> Department of Psychiatry
>>> Medical University of South Carolina
>>> 67 President Street, 5 South
>>> Charleston, SC 29425
>>>
>>> Pager: (843) 792-2123 #15493
>>
>>
>> ---------------------------------------------------------------------
>> ---
>> ---
>> Stephen M. Smith, Professor of Biomedical Engineering
>> Associate Director, Oxford University FMRIB Centre
>>
>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>> +44 (0) 1865 222726 (fax 222717)
>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>> ---------------------------------------------------------------------
>> ---
>> ---
>> ===========================================================
> ==============
------------------------------------------------------------------------
---
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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