Hi, I'm afraid this relates to your local SGE batch setup, not the
distributed FSL code.
Cheers, Steve.
On 1 Mar 2007, at 16:55, Jennifer Bramen wrote:
> Hi All
>
> I am getting the above error, but only on one of my Higher Level
> designs (the others run fine) so I
> do not think this is an issue with my conputer. Also, I ran another
> Contrast using all the inputs
> form the error producing design, and it runs, so it isn;t a problem
> with the inputs. I cannot find
> what is wrong with this design. Can someone take a look?
>
> Thanks
>
> Jen
>
> ___
>
> below is the full error. Attached is the design
>
>
> commands are /Volumes/local/fsl3.3/bin/flame --cope=/Volumes/
> Songbook1/jbramen/
> newAudTime/Contrasts/wbr/Short.gfeat/cope1.feat/tmpcope$
> {SGE_TASK_ID} --vc=/Volumes/
> Songbook1/jbramen/newAudTime/Contrasts/wbr/Short.gfeat/cope1.feat/
> tmpvarcope$
> {SGE_TASK_ID} --dvc=/Volumes/Songbook1/jbramen/newAudTime/Contrasts/
> wbr/Short.gfeat/
> cope1.feat/tmptdof${SGE_TASK_ID} --mask=/Volumes/Songbook1/jbramen/
> newAudTime/
> Contrasts/wbr/Short.gfeat/cope1.feat/tmpmask${SGE_TASK_ID} --ld=/
> Volumes/Songbook1/
> jbramen/newAudTime/Contrasts/wbr/Short.gfeat/cope1.feat/stats$
> {SGE_TASK_ID} --dm=/
> Volumes/Songbook1/jbramen/newAudTime/Contrasts/wbr/Short.gfeat/
> cope1.feat/design.mat --
> cs=/Volumes/Songbook1/jbramen/newAudTime/Contrasts/wbr/Short.gfeat/
> cope1.feat/
> design.grp --tc=/Volumes/Songbook1/jbramen/newAudTime/Contrasts/wbr/
> Short.gfeat/
> cope1.feat/design.con --ols --nj=10000 --bi=500 --se=1 --fm --
> zlt=1.91 --zut=2.31
> I am about to run the qsub command.
> Unable to run job: job rejected: 0 is an invalid task id.
> Exiting.
> while executing
> "exec ${fmri(sgedir)}/qsub -sync y -o ${fmri(tmpoutdir)}/output -e $
> {fmri(tmpoutdir)}/error -t 1-$
> {lastslice}:1 $command_file_name"
> (procedure "feat5:proc" line 1428)
> invoked from within
> "feat5:proc [ file rootname [ lindex $argv 0 ] ]"
> (file "/Volumes/local/fsl3.3/bin/feat_sge" line 20)
>
> <Short.fsf>
------------------------------------------------------------------------
---
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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