Hi,
It _probably_ doesn't matter which order those two happen in, but to
be safe I would run the dewarping before BET, as FEAT does,
Cheers.
On 30 Mar 2007, at 22:02, Peter Fried wrote:
> Assuming that one is not using the GUI, is there a benefit to running
> dewarp prior to bet?
>
> I apologize if this follow-up question is straying away from the
> original
> subject line.
>
> Thanks.
>
> -Pete
>
>> Hi,
>>
>> The order that these are done in FEAT is:
>> motion correction, unwarping, then brain extraction (with
>> betfunc).
>>
>> All the best,
>> Mark
>>
>>
>> On 29 Mar 2007, at 16:00, Peter Fried wrote:
>>
>>> Hi,
>>>
>>> At which point in the processing stream should I correct for motion?
>>> Before BET, after BET but before dewarping, or after dewarping?
>>> Thanks.
>>>
>>> -Pete Fried
>>>
>>> Center for Magnetic Resonance Research
>>> University of Minnesota
>>
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Stephen M. Smith, Professor of Biomedical Engineering
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FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
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