Dear Aditya,
You need to mv the original atlasquery file to atlasquery_bin (that is, rename
the file). Then you need to make a *new* file called atlasquery, and it is in this
new file that you put the text I sent (e.g., using a text editor). You'll also need to run:
chmod 755 $FSLDIR/bin/atlasquery
to make it able to be run (i.e. executable).
Also note that there was a problem with my original script (which is to be the
file atlasquery). The script below is a fixed version of the original.
All the best,
Mark
#!/bin/sh
if [ `uname` = "Darwin" ] ; then
DYLD_LIBRARY_PATH=${FSLDIR}/bin/fslview.app/Contents/Frameworks
export DYLD_LIBRARY_PATH
${FSLDIR}/bin/atlasquery_bin "$1" "$2" "$3" "$4" "$5" "$6" "$7" "$8" "$9" "$10"
fi
if [ `uname` = "Linux" ] ; then
LD_LIBRARY_PATH=${FSLDIR}/lib:${LD_LIBRARY_PATH}
export LD_LIBRARY_PATH
${FSLDIR}/bin/atlasquery_bin "$1" "$2" "$3" "$4" "$5" "$6" "$7" "$8" "$9" "$10"
fi
On 28 Jul 2011, at 18:14, Aditya Kumar Kasinadhuni wrote:
> Can you please tell me how I can put that code into that file? I am trying to open it with a text editor but that fails.
>
> Also is the first command supposed to cp as opposed to mv? I am confused as after that the file is renamed and the file atlasquery no longer exists. Or is it that the changes have to be made to the atlasquery_bin file?
>
> Thank you
>
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