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Dear Aditya,

You need to mv the original atlasquery file to atlasquery_bin (that is, rename
the file).  Then you need to make a *new* file called atlasquery, and it is in this
new file that you put the text I sent (e.g., using a text editor).  You'll also need to run:
  chmod 755 $FSLDIR/bin/atlasquery
to make it able to be run (i.e. executable).

Also note that there was a problem with my original script (which is to be the
file atlasquery).  The script below is a fixed version of the original.

All the best,
	Mark


#!/bin/sh

if [ `uname` = "Darwin" ] ; then
   DYLD_LIBRARY_PATH=${FSLDIR}/bin/fslview.app/Contents/Frameworks
   export DYLD_LIBRARY_PATH
   ${FSLDIR}/bin/atlasquery_bin "$1" "$2" "$3" "$4" "$5" "$6" "$7" "$8" "$9" "$10"
fi
if [ `uname` = "Linux" ] ; then
   LD_LIBRARY_PATH=${FSLDIR}/lib:${LD_LIBRARY_PATH}
   export LD_LIBRARY_PATH
   ${FSLDIR}/bin/atlasquery_bin "$1" "$2" "$3" "$4" "$5" "$6" "$7" "$8" "$9" "$10"
fi




On 28 Jul 2011, at 18:14, Aditya Kumar Kasinadhuni wrote:

> Can you please tell me how I can put that code into that file? I am trying to open it with a text editor but that fails. 
> 
> Also is the first command supposed to cp as opposed to mv? I am confused as after that the file is renamed and the file atlasquery no longer exists. Or is it that the changes have to be made to the atlasquery_bin file?
> 
> Thank you
>