Not sure - header looks ok I think - maybe you should upload the file
for us to have a peek:
Please upload the files in a single compressed tarfile to
http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
and then email me the upload ID.
Cheers.
On 3 Jun 2007, at 18:45, Bettyann Chodkowski wrote:
> Hello All,
>
> I am running FSL v3.3 on sun/solaris and get the following error
> when i run avwmaths++:
>
> % avwmaths++ 01_2_00_sc -thrP 75 01_2_00_sc_mask
> -thrP
> 75
> Image Exception : #5 :: Out of Bounds (time index)
> Abort
>
> Yet I do not get an error when I use option -thrp (little 'p'):
>
> % avwmaths++ 01_2_00_sc -thrp 75 01_2_00_sc_mask
> -thrp
> 75
>
> 01_2_00_sc was created from a previous avwmaths++ command and the
> values of
> 01_2_00_sc.hdr fields are:
>
> % avwhd 01_2_00_sc
> filename 01_2_00_sc
>
> sizeof_hdr 348
> data_type
> db_name
> extents 0
> session_error 0
> regular r
> hkey_un0
> dim0 3
> dim1 512
> dim2 512
> dim3 35
> dim4 1
> dim5 1
> dim6 1
> dim7 1
> vox_units
> cal_units
> unused1 0
> datatype 4
> bitpix 16
> pixdim0 0.0000000
> pixdim1 0.4380000
> pixdim2 0.4380000
> pixdim3 3.4200001
> pixdim4 1.0000000
> pixdim5 1.0000000
> pixdim6 1.0000000
> pixdim7 1.0000000
> vox_offset 0.0000
> funused1 1.0000
> funused2 0.0000
> funused3 0.0000
> cal_max 32767.0000
> cal_min 0.0000
> compressed 0
> verified 0
> glmax 32767
> glmin 0
> descrip FSL3.3
> aux_file
> orient 0
> originator
> origin1 0
> origin2 0
> origin3 0
> generated
> scannum
> patient_id
> exp_date
> exp_time
> hist_un0
> views 0
> vols_added 0
> start_field 0
> field_skip 0
> omax 0
> omin 0
> smin 0
> smin 0
>
> Do I have one of the header fields set incorrectly? Is there a way
> around this?
>
> Thank you,
> - BettyAnn
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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