Matthew,
Thank you! We have installed the newest verison of avwmaths++. That has fixed the problem I
had. I appreciate the easy fix.
Regards,
- BettyAnn
On Wed, 6 Jun 2007 14:00:45 +0100, Matthew Webster <[log in to unmask]> wrote:
>Hi,
> it's possible you may be running an old version of avwmaths++
>which contains a bug related to the-thrP option, it might well be
>worth recompiling avwmaths++.cc from the latest source release
>(at http://www.fmrib.ox.ac.uk/fsldownloads/ )
>
>
>regards
>
>matthew
>
> > Hello All,
>
> >
>
> > I am running FSL v3.3 on sun/solaris and get the following error
>
> > when i run avwmaths++:
>
> >
>
> > % avwmaths++ 01_2_00_sc -thrP 75 01_2_00_sc_mask
>
> > -thrP
>
> > 75
>
> > Image Exception : #5 :: Out of Bounds (time index)
>
> > Abort
>
> >
>
> > Yet I do not get an error when I use option -thrp (little 'p'):
>
> >
>
> > % avwmaths++ 01_2_00_sc -thrp 75 01_2_00_sc_mask
>
> > -thrp
>
> > 75
>
> >
>
> > 01_2_00_sc was created from a previous avwmaths++ command and the
>
> > values of
>
> > 01_2_00_sc.hdr fields are:
>
> >
>
> > % avwhd 01_2_00_sc
>
> > filename 01_2_00_sc
>
> >
>
> > sizeof_hdr 348
>
> > data_type
>
> > db_name
>
> > extents 0
>
> > session_error 0
>
> > regular r
>
> > hkey_un0
>
> > dim0 3
>
> > dim1 512
>
> > dim2 512
>
> > dim3 35
>
> > dim4 1
>
> > dim5 1
>
> > dim6 1
>
> > dim7 1
>
> > vox_units
>
> > cal_units
>
> > unused1 0
>
> > datatype 4
>
> > bitpix 16
>
> > pixdim0 0.0000000
>
> > pixdim1 0.4380000
>
> > pixdim2 0.4380000
>
> > pixdim3 3.4200001
>
> > pixdim4 1.0000000
>
> > pixdim5 1.0000000
>
> > pixdim6 1.0000000
>
> > pixdim7 1.0000000
>
> > vox_offset 0.0000
>
> > funused1 1.0000
>
> > funused2 0.0000
>
> > funused3 0.0000
>
> > cal_max 32767.0000
>
> > cal_min 0.0000
>
> > compressed 0
>
> > verified 0
>
> > glmax 32767
>
> > glmin 0
>
> > descrip FSL3.3
>
> > aux_file
>
> > orient 0
>
> > originator
>
> > origin1 0
>
> > origin2 0
>
> > origin3 0
>
> > generated
>
> > scannum
>
> > patient_id
>
> > exp_date
>
> > exp_time
>
> > hist_un0
>
> > views 0
>
> > vols_added 0
>
> > start_field 0
>
> > field_skip 0
>
> > omax 0
>
> > omin 0
>
> > smin 0
>
> > smin 0
>
> >
>
> > Do I have one of the header fields set incorrectly? Is there a way
>
> > around this?
>
> >
>
> > Thank you,
>
> > - BettyAnn
>
>
>
>
>
>------------------------------------------------------------------------
>
>---
>
>Stephen M. Smith, Professor of Biomedical Engineering
>
>Associate Director, Oxford University FMRIB Centre
>
>
>
>FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>
>+44 (0) 1865 222726 (fax 222717)
>
>[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>
>------------------------------------------------------------------------
>
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