Hi Matteo!
Thank you for your reply - I will now ask eddy for the residuals (it is the --residuals flag, isn't it?) and try it once again.
The FSL version I use is v6.0.
Beyond these technical issue I have one further question:
I am not really sure how to handle the qc output, e.g.
- which qc index is 'most important'?
- which datasets should be corrected and which should be excluded due to low quality? (e.g. exclude datasets if > 20 % outliers)
Do you have any recommendations regarding these issues?
Cheers!
Ida
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