Hi Matteo!
I made the list of directories and still squad does not work now saying:
Generating group database...
Traceback (most recent call last):
File "/usr/local/fsl/bin/eddy_squad", line 42, in <module>
main(args.list, args.grouping, args.group_db, args.update, args.output_dir)
File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/eddy_qc/SQUAD/squad.py", line 87, in main
db = squad_db.main(out_dir + '/group_db.json', 'w', sList)
File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/eddy_qc/SQUAD/squad_db.py", line 64, in main
raise ValueError('Eddy output inconsistency detected!')
ValueError: Eddy output inconsistency detected!
The command was:
eddy_squad quad_list.txt -g group_for_squad.txt -u -o squad_qc_240420
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