Hi Careina,
This is a little confusing. A homology model *is* a set of coordinates
(usually provided as a PDB file by most servers/packages I know of). The
MolProbity site at http://molprobity.biochem.duke.edu/ allows you to
upload your own PDB file, and in my experience is quite forgiving
regarding format.
Hope this helps,
Tristan
On 2018-03-02 11:44, Careina Edgooms wrote:
> Dear all
>
> What programs are best used for validate homology models? I know of
> molprobity but if there are no coordinates I cannot use it. Is there a
> way to use such programs with homology models?
>
> Also I wish to use pdbepisa for to charaterise dimer interface but
> again for homology model this cannot be done as there is no PDB model.
> Does anybody know way to use PISA software on my own model that is not
> deposited in PDB?
>
> Thank you in advance
> Careina
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