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Subject	From	Date	Size
[git/cctbx_project] master: DataManager: add function for writing MTZ files (4e4391ef4b)	CCTBX commit	Fri, 31 May 2019 15:14:49 -0700	277 lines
[git/cctbx_project] master: Bugfix and better printout. (97e2e30866)	CCTBX commit	Fri, 31 May 2019 11:09:29 -0700	330 lines
[git/cctbx_project] master: conda: move dependencies to backup channel (04c8c4fe5b)	CCTBX commit	Thu, 30 May 2019 23:32:48 -0700	100 lines
[git/cctbx_project] master: Remove bare printing (2b5e107fcd)	CCTBX commit	Fri, 31 May 2019 12:49:29 +0800	114 lines
[git/cctbx_project] master: fix invalid colours when colourdata has a nan value as first element. Towards consistent display of missing data (eaa2e4ff77)	CCTBX commit	Thu, 30 May 2019 18:01:35 +0100	685 lines
[git/cctbx_project] master: improved error message (ef07775d70)	CCTBX commit	Thu, 30 May 2019 09:40:32 -0700	132 lines
[git/cctbx_project] master: IOTA and PRIME GUI bugfixes and tweaks (91f6f086eb)	CCTBX commit	Thu, 30 May 2019 09:36:41 -0700	800 lines
[git/dxtbx] master: pacify flake8 (c7f0162)	DXTBX commit	Thu, 30 May 2019 07:53:57 +0100	114 lines
[git/dxtbx] master: Fix format class hierarchy (1ee0d9c)	DXTBX commit	Thu, 30 May 2019 07:53:57 +0100	118 lines
[git/cctbx_project] master: ProgramTemplate: handle cases where the output PHIL scope may not exist (1a71792f7f)	CCTBX commit	Wed, 29 May 2019 15:21:39 -0700	125 lines
[git/dxtbx] master: Run flake8 only on pull requests (2ca91ad)	DXTBX commit	Wed, 29 May 2019 21:39:33 +0100	97 lines
[git/dxtbx] master: Run flake8 tests during testing stage (933a521)	DXTBX commit	Wed, 29 May 2019 21:35:29 +0100	161 lines
[git/dxtbx] master: Fix DeprecationWarnings caused by dxtbx.ext move (f007bbc)	DXTBX commit	Wed, 29 May 2019 19:51:45 +0100	498 lines
[git/dxtbx] master: Fix test (b42f70b)	DXTBX commit	Wed, 29 May 2019 19:41:47 +0100	93 lines
[git/cctbx_project] master: Fixes for ignoring NaN values when generating colour and radii data. GUI changes (b6d0539e86)	CCTBX commit	Wed, 29 May 2019 18:35:28 +0100	1285 lines
[git/dxtbx] master: Move dxtbx extensions from dxtbx.* to dxtbx.ext.* (a6773c6)	DXTBX commit	Wed, 29 May 2019 14:41:26 +0100	195 lines
[git/dxtbx] master: Invert FPE defaults for dxtbx (#28) (558119d)	DXTBX commit	Wed, 29 May 2019 13:08:01 +0100	131 lines
[git/cctbx_project] master: gui bugfixes (d3c82f9b45)	CCTBX commit	Tue, 28 May 2019 18:30:44 -0700	930 lines
[git/cctbx_project] master: not importing numpy (dc4ad9b03e)	CCTBX commit	Tue, 28 May 2019 20:31:50 +0100	95 lines
[git/cctbx_project] master: Don't compute min max values of arrays with nan values. Refactoring code to avoid excessive rebuilding of scenes and matching of miller arrays (cc717c4714)	CCTBX commit	Tue, 28 May 2019 17:28:21 +0100	1081 lines
[git/dxtbx] master: Rename serialize.load_path to resolve_path (#23) (2a9714d)	DXTBX commit	Tue, 28 May 2019 11:44:17 +0100	1115 lines
[git/dxtbx] master: Clean clutter (043d9a1)	DXTBX commit	Sun, 26 May 2019 05:10:26 +0100	127 lines
[git/cctbx_project] master: Deactivate hbond vs clash for now. (2e04c08ae)	CCTBX commit	Fri, 24 May 2019 17:18:29 -0700	93 lines
[git/cctbx_project] master: Bugfix (8c8603f5f)	CCTBX commit	Fri, 24 May 2019 15:20:27 -0700	129 lines
[git/cctbx_project] master: Hbonds: show method, cut-off values, cleanup. (4d058d31d)	CCTBX commit	Fri, 24 May 2019 15:08:38 -0700	807 lines
[git/dxtbx] master: Enable precommitbx nagging (099d878)	DXTBX commit	Fri, 24 May 2019 21:57:53 +0100	90 lines
[git/cctbx_project] master: Process nonbonded proxies: stub for Hbonds class (d66038eaa)	CCTBX commit	Fri, 24 May 2019 13:21:50 -0700	411 lines
[git/cctbx_project] master: CCTBXParser: bug fix for constructing working_phil (c916ba716)	CCTBX commit	Fri, 24 May 2019 12:51:22 -0700	89 lines
[git/cctbx_project] master: gui changes (aba929b4c)	CCTBX commit	Fri, 24 May 2019 19:22:14 +0100	587 lines
[git/cctbx_project] master: switched cbetadev to use program template (b940da5e6)	CCTBX commit	Thu, 23 May 2019 15:14:34 -0400	385 lines
[git/cctbx_project] master: switched clashscore to use program template (0b402ba93)	CCTBX commit	Thu, 23 May 2019 15:14:34 -0400	597 lines
[git/cctbx_project] master: switched rotalyze to use program template (bc5c8598b)	CCTBX commit	Thu, 23 May 2019 15:14:34 -0400	422 lines
[git/cctbx_project] master: switched cablam to using program template, fixed filename printing in oneline (84a0aca1c)	CCTBX commit	Thu, 23 May 2019 15:14:34 -0400	877 lines
[git/cctbx_project] master: Reorder intensity statistics to odd, even, all. (3de3d86df)	CCTBX commit	Thu, 23 May 2019 11:45:10 -0700	142 lines
[git/cctbx_project] master: Disable intensity histogram calculations, improve comments. (d4b777ee6)	CCTBX commit	Thu, 23 May 2019 11:18:55 -0700	658 lines
[git/cctbx_project] master: further gui changes (92d84e5ec)	CCTBX commit	Thu, 23 May 2019 17:55:56 +0100	943 lines
[git/cctbx_project] master: spellcheck (5ec60685b)	CCTBX commit	Thu, 23 May 2019 09:42:04 +0100	99 lines
[git/cctbx_project] master: Remove imports (90c04d77c)	CCTBX commit	Wed, 22 May 2019 21:42:03 -0700	118 lines
[git/cctbx_project] master: NBO: check for monomer library. (8c96ab67d)	CCTBX commit	Wed, 22 May 2019 21:38:30 -0700	127 lines
[git/cctbx_project] master: Ligand validation: use new clashes class. Cleanup. (679086e6a)	CCTBX commit	Wed, 22 May 2019 20:47:45 -0700	812 lines
[git/cctbx_project] master: fixing some phil logic (61d1df1d9)	CCTBX commit	Wed, 22 May 2019 17:38:13 +0100	623 lines
[git/dxtbx] master: Use struct not numpy to unpack the bytestring. (#2) (19f630c)	DXTBX commit	Wed, 22 May 2019 12:13:42 +0100	195 lines
Jenkins 5a cctbx Tests build 8381 Fixed	DLS Jenkins	Wed, 22 May 2019 11:01:31 +0100	42 lines
[git/cctbx_project] master: Skip test if monomer library not present (2b19fb7b5)	CCTBX commit	Wed, 22 May 2019 10:53:00 +0100	132 lines
[git/cctbx_project] master: Reactivate flex. Dont trust findimports... (54516c0a7)	CCTBX commit	Tue, 21 May 2019 23:29:35 -0700	87 lines
[git/cctbx_project] master: Ligand validation: adapt clashes code. Cleanup. Make test. (f5a6dda8d)	CCTBX commit	Tue, 21 May 2019 23:16:10 -0700	1220 lines
[git/cctbx_project] master: Output more detailed intensity statistics, create new worker for output (09cb987a7)	CCTBX commit	Tue, 21 May 2019 17:26:31 -0700	1137 lines
Jenkins 5a cctbx Tests build 8377 Unstable	DLS Jenkins	Wed, 22 May 2019 00:05:40 +0100	52 lines
[git/cctbx_project] master: NBO: Remove unnecessary check. Activate test. (3859d4053)	CCTBX commit	Tue, 21 May 2019 15:05:56 -0700	183 lines
[git/cctbx_project] master: Output more detailed intensity statistics, create new worker for output, use os.path.join instead of '/'. (6bca89413)	CCTBX commit	Tue, 21 May 2019 12:16:10 -0700	408 lines
[git/cctbx_project] master: incremental gui development (cd3c9820b)	CCTBX commit	Tue, 21 May 2019 17:31:58 +0100	1193 lines
[git/dxtbx] master: overload Crystal.set_unit_cell() to accept an actual unit_cell object (88b23ec)	DXTBX commit	Tue, 21 May 2019 13:28:08 +0100	235 lines
[git/dxtbx] master: split up test (4ee5585)	DXTBX commit	Tue, 21 May 2019 13:28:08 +0100	87 lines
[git/cctbx_project] master: getting rid of unused imports, bare excepts (835b8053a)	CCTBX commit	Mon, 20 May 2019 22:51:21 +0100	178 lines
[git/cctbx_project] master: some more bugfixes (97f558692)	CCTBX commit	Mon, 20 May 2019 14:26:55 -0700	219 lines
[git/cctbx_project] master: NBO: sort_clashes method, is_clashing method. Plus tests. (74c9d8edc)	CCTBX commit	Mon, 20 May 2019 12:39:04 -0700	633 lines
[git/cctbx_project] master: Added NGL_HKLviewerGui.py (639c79ac0)	CCTBX commit	Mon, 20 May 2019 19:11:55 +0100	1005 lines
[git/cctbx_project] master: yet even more changes towards a gui (34d260c2f)	CCTBX commit	Mon, 20 May 2019 19:09:39 +0100	385 lines
[git/cctbx_project] master: Missing headers hint for macOS >= 10.14 (#240, #333) (d6f0f744b)	CCTBX commit	Mon, 20 May 2019 09:31:13 +0100	99 lines
[git/cctbx_project] master: always build wxpython4 on macOS >= 10.14 (#240, #333) (e9d68f7d6)	CCTBX commit	Mon, 20 May 2019 09:31:13 +0100	113 lines
[git/cctbx_project] master: NBO: cleanup and docstrings. (6567ccec3)	CCTBX commit	Sat, 18 May 2019 23:24:01 -0700	407 lines
[git/cctbx_project] master: NBOs: refactor tests (5114803a8)	CCTBX commit	Sat, 18 May 2019 23:00:41 -0700	1629 lines
[git/cctbx_project] master: NBO: refactor tests. (0cd11e38a)	CCTBX commit	Sat, 18 May 2019 17:45:21 -0700	463 lines
[git/cctbx_project] master: NBO: break up results in sym related and macro_mol overlaps. (4100e16aa)	CCTBX commit	Sat, 18 May 2019 14:12:53 -0700	1101 lines
[git/cctbx_project] master: NBO: refactoring, transfer test. (fa8ed2966)	CCTBX commit	Sat, 18 May 2019 13:13:48 -0700	1409 lines
[git/cctbx_project] master: more plotting bugfixes (036ad1652)	CCTBX commit	Fri, 17 May 2019 16:59:26 -0700	2021 lines
[git/cctbx_project] master: NBO: transfer test. (b95f4c4e5)	CCTBX commit	Fri, 17 May 2019 15:29:58 -0700	506 lines
[git/cctbx_project] master: NBO: Move clashes loop to function. Better docstring. (dd4d4674c)	CCTBX commit	Fri, 17 May 2019 11:20:03 -0700	506 lines
[git/cctbx_project] master: even more changes towards a gui (da8d4d767)	CCTBX commit	Fri, 17 May 2019 18:59:17 +0100	527 lines
[git/dxtbx] master: Revert unicode cbf changes. (dbe6803)	DXTBX commit	Fri, 17 May 2019 09:27:34 -0700	183 lines
Jenkins 5a cctbx Tests build 8352 Fixed	DLS Jenkins	Fri, 17 May 2019 16:28:00 +0100	43 lines
[git/dxtbx] master: Horrible hack (ebe7369)	DXTBX commit	Fri, 17 May 2019 16:19:26 +0100	106 lines
Jenkins 5a cctbx Tests build 8351 Unstable	DLS Jenkins	Fri, 17 May 2019 15:54:20 +0100	52 lines
[git/dxtbx] master: Reverse definitions of detector size (f0f3e1e)	DXTBX commit	Fri, 17 May 2019 15:40:32 +0100	140 lines
[git/dxtbx] master: Make error message slightly more useful (dca41d4)	DXTBX commit	Fri, 17 May 2019 12:03:30 +0100	130 lines
[git/cctbx_project] master: NBO: refactor the class (5f13bf983)	CCTBX commit	Thu, 16 May 2019 22:45:51 -0700	1125 lines
[git/cctbx_project] master: plotting bugfixes (dc3720bf2)	CCTBX commit	Thu, 16 May 2019 18:01:10 -0700	1845 lines
[git/dxtbx] master: Py2/3 more Unicode -> bytes in cbf land (0f31f2b)	DXTBX commit	Thu, 16 May 2019 16:36:30 -0700	1572 lines
[git/cctbx_project] master: strange reason for test failure (83c4cabd2)	CCTBX commit	Thu, 16 May 2019 16:15:46 -0700	101 lines
Jenkins 5a cctbx Tests build 8346 Fixed	DLS Jenkins	Fri, 17 May 2019 00:09:16 +0100	43 lines
[git/dxtbx] master: Back out one of the unicode changes to make the tests pass again. (29943ce)	DXTBX commit	Thu, 16 May 2019 15:56:38 -0700	91 lines
Jenkins 5a cctbx Tests build 8345 Unstable	DLS Jenkins	Thu, 16 May 2019 23:41:28 +0100	284 lines
[git/cctbx_project] master: corrected logic (cabb46b75)	CCTBX commit	Thu, 16 May 2019 15:32:02 -0700	92 lines
[git/dxtbx] master: Py 2/3: handle strings in cbflib (5e69ff6)	DXTBX commit	Thu, 16 May 2019 15:29:24 -0700	1812 lines
[git/cctbx_project] master: needed to work with non-loop restraints (ef6265d77)	CCTBX commit	Thu, 16 May 2019 15:19:29 -0700	87 lines
[git/cctbx_project] master: stub for more detailed metal coordination filtering (27413a55e)	CCTBX commit	Thu, 16 May 2019 15:19:29 -0700	140 lines
[git/dxtbx] master: refactoring: avoid 'unicode', simplify code (2547fbb)	DXTBX commit	Thu, 16 May 2019 22:57:52 +0100	168 lines
[git/dxtbx] master: Py2/3 metaclass (e987b8a)	DXTBX commit	Thu, 16 May 2019 10:39:25 -0700	133 lines
[git/cctbx_project] master: more changes towards a gui (9cc60a331)	CCTBX commit	Thu, 16 May 2019 18:17:38 +0100	973 lines
[git/dxtbx] master: File refactoring (f1a5e55)	DXTBX commit	Thu, 16 May 2019 16:31:25 +0100	1630 lines
[git/dxtbx] master: map not subscriptable (c28cc4a)	DXTBX commit	Thu, 16 May 2019 16:08:46 +0100	88 lines
[git/dxtbx] master: clean clutter (139877c)	DXTBX commit	Thu, 16 May 2019 16:05:03 +0100	180 lines
[git/dxtbx] master: forward compatibility (510921d)	DXTBX commit	Thu, 16 May 2019 11:00:54 +0100	168 lines
[git/cctbx_project] master: NBO: stub for new class. (e26864c29)	CCTBX commit	Wed, 15 May 2019 22:34:41 -0700	348 lines
[git/cctbx_project] master: Update test for sequence cif, stop _struct_ref_seq checks until cif output is reworked (c6852e7b9)	CCTBX commit	Wed, 15 May 2019 16:13:20 -0700	328 lines
[git/cctbx_project] master: NBO: refactor tests to use model class. (5568470ad)	CCTBX commit	Wed, 15 May 2019 12:33:45 -0700	640 lines
[git/cctbx_project] master: Towards making sockets between NGLHKLviewerGui.py and cmdlinesframe.py (63de2e2f3)	CCTBX commit	Wed, 15 May 2019 18:07:47 +0100	368 lines
[git/dxtbx] master: Reject commits w/ merge conflicts or large files (db23201)	DXTBX commit	Wed, 15 May 2019 11:58:05 +0100	83 lines
[git/cctbx_project] master: NBOs: No need for filenames in phil scope. (6229b6049)	CCTBX commit	Tue, 14 May 2019 17:19:48 -0700	204 lines
[git/cctbx_project] master: Nonbonded overlaps: better phil parameter names and clean up of unused parameters. (57ea1f69b)	CCTBX commit	Tue, 14 May 2019 16:04:22 -0700	439 lines
[git/cctbx_project] master: Use import flex (6069c0e31)	CCTBX commit	Tue, 14 May 2019 14:31:06 -0700	86 lines
[git/cctbx_project] master: Nonbonded overlaps: use model class, adapt tests, command line tool can read cif files. (a25541080)	CCTBX commit	Tue, 14 May 2019 14:04:47 -0700	1745 lines
[git/cctbx_project] master: un-cluttering (6ad3b0cd3)	CCTBX commit	Tue, 14 May 2019 20:34:39 +0100	81 lines
[git/cctbx_project] master: Allowing phil input exclusively for controlling the viewer (09bf6336a)	CCTBX commit	Tue, 14 May 2019 18:07:22 +0100	726 lines
[git/cctbx_project] master: update repository location (6e9db339f)	CCTBX commit	Tue, 14 May 2019 10:45:25 +0100	88 lines
[git/cctbx_project] master: un-cluttering (d9e7c78cc)	CCTBX commit	Mon, 13 May 2019 21:38:58 +0100	82 lines
[git/cctbx_project] master: Refactor nonbonded_overlaps: use program template. (91181a149)	CCTBX commit	Mon, 13 May 2019 13:02:27 -0700	1587 lines
[git/cctbx_project] master: Towards allowing phil input exclusively for controlling the viewer (29f2d288c)	CCTBX commit	Mon, 13 May 2019 18:10:08 +0100	603 lines
[git/dxtbx] master: cleanup (c6b2624)	DXTBX commit	Mon, 13 May 2019 08:00:41 +0100	109 lines
[git/cctbx_project] master: conda: change channels for py36 to be the same as py27 (6af789668)	CCTBX commit	Sun, 12 May 2019 22:53:04 -0700	160 lines
[git/cctbx_project] master: configure: use installed scons, if available (71f4b84d7)	CCTBX commit	Sun, 12 May 2019 20:08:16 -0700	106 lines
[git/cctbx_project] master: conda: only set dispatcher environment variables when needed (23f2e1d25)	CCTBX commit	Sun, 12 May 2019 19:26:35 -0700	162 lines
[git/cctbx_project] master: Fix tls test on Windows (b56d5d9c8)	CCTBX commit	Fri, 10 May 2019 15:10:39 -0700	91 lines
[git/cctbx_project] master: Avoid OSError when cctbx.python is run with uwsgi (9f48c8837)	CCTBX commit	Fri, 10 May 2019 13:09:31 -0700	93 lines
[git/cctbx_project] master: Make workers able to be ran standalone (abec745b8)	CCTBX commit	Fri, 10 May 2019 08:47:05 -0700	453 lines
[git/cctbx_project] master: Update boilerplate to save results (98a8762a1)	CCTBX commit	Fri, 10 May 2019 08:36:51 -0700	109 lines
[git/dxtbx] master: Revert FormatSMVJHSim (692baf7)	DXTBX commit	Fri, 10 May 2019 09:39:45 +0100	117 lines
[git/dxtbx] master: Raise a Sorry when invalid image passed (56d9601)	DXTBX commit	Fri, 10 May 2019 04:27:02 +0100	281 lines
[git/cctbx_project] master: Add mtz output (c1bc1e3b9)	CCTBX commit	Thu, 9 May 2019 11:07:59 -0700	310 lines
[git/cctbx_project] master: Handle mpack (384ace794)	CCTBX commit	Thu, 9 May 2019 08:50:58 -0700	110 lines
[git/cctbx_project] master: Fix longstanding bug with counting total number of lattices (ec3e4680c)	CCTBX commit	Thu, 9 May 2019 08:46:41 +0900	99 lines
[git/cctbx_project] master: Bug fix for standalone GUI logging directories with lots of files instead of composite files (7a5a82607)	CCTBX commit	Thu, 9 May 2019 07:01:58 +0900	285 lines
[git/cctbx_project] master: Use the center of mass (com) for the centroid definition for small cell. (ffe84f12a)	CCTBX commit	Thu, 9 May 2019 05:24:44 +0900	175 lines
[git/cctbx_project] master: Sort runs for run stats standalone (879d0cf25)	CCTBX commit	Wed, 8 May 2019 11:32:55 -0700	92 lines
[git/cctbx_project] master: Resize main window to fit screen on application start if display size is too small (eeed4dc7c)	CCTBX commit	Thu, 9 May 2019 02:09:39 +0900	97 lines
[git/cctbx_project] master: Bugfixes for small cell processing using standalone GUI (4d232bbca)	CCTBX commit	Thu, 9 May 2019 02:09:39 +0900	154 lines
[git/dxtbx] master: Consistent trusted_range for FormatSMVADSC etc. (5e6cbae)	DXTBX commit	Wed, 8 May 2019 13:56:01 +0100	673 lines
[git/cctbx] master: bug fixes (57581855f)	CCTBX commit	Tue, 7 May 2019 19:05:39 +0100	269 lines
[git/cctbx] master: conda: use warning instead of error (d83b77c69)	CCTBX commit	Mon, 6 May 2019 19:17:52 -0700	97 lines
[git/cctbx] master: Parameters to fine-tune hbond angle sigmas. (c14114868)	CCTBX commit	Mon, 6 May 2019 17:30:56 -0700	392 lines
[git/cctbx] master: Better NCS groups filtering. (0d61d621b)	CCTBX commit	Mon, 6 May 2019 13:27:57 -0700	168 lines
[git/cctbx] master: Make sure gridding last is >= gridding first; set solvent fraction if not set, shift pdb_inp in segment_and_split_map (49251518a)	CCTBX commit	Mon, 6 May 2019 10:42:55 -0700	214 lines
[git/cctbx] master: removed unused imports that I am actually using (ae48defa0)	CCTBX commit	Sun, 5 May 2019 09:13:32 -0700	101 lines
[git/cctbx] master: added new test for mosaic spread functionality (334d037e8)	CCTBX commit	Sun, 5 May 2019 08:44:26 -0700	344 lines
[git/cctbx] master: fix mosaic domain initialization bug hopefully without breaking Sauter features (884b735a7)	CCTBX commit	Sun, 5 May 2019 08:44:26 -0700	271 lines
[git/cctbx] master: fixing test. Order of setting variables matters in simtbx. whenever mosaic_spread_deg = 0 the mosaic_domains is automatically set to 1 (cc88a9b2b)	CCTBX commit	Sun, 5 May 2019 08:44:26 -0700	96 lines
[git/cctbx] master: multiple fixes in nonsense space (d5997e85f)	CCTBX commit	Sun, 5 May 2019 22:45:14 +0800	987 lines
[git/dxtbx] master: Clean clutter (52bb9cb)	DXTBX commit	Sun, 5 May 2019 05:10:21 +0100	119 lines
[git/cctbx] master: DataManager: add default output filenames (ba89fd229)	CCTBX commit	Sat, 4 May 2019 20:11:14 -0700	397 lines
[git/cctbx] master: DataManager: update default filename functions (85f78d0ee)	CCTBX commit	Sat, 4 May 2019 19:18:54 -0700	617 lines
[git/cctbx] master: ProgramTemplate: handle case where DataManager is None (76c486f1f)	CCTBX commit	Sat, 4 May 2019 17:59:37 -0700	113 lines
[git/cctbx] master: DataManager: add default output filename and overwrite options (d87000681)	CCTBX commit	Sat, 4 May 2019 17:44:13 -0700	1013 lines
[git/cctbx] master: mmtbx: fix extension name (19a1b2104)	CCTBX commit	Sat, 4 May 2019 17:28:30 -0700	82 lines
[git/cctbx] master: Remove accidental commit of tmp files (4b35afc56)	CCTBX commit	Sat, 4 May 2019 19:20:50 +0800	580 lines
[git/cctbx] master: Find H bond code from Wensong. Needs more testing and optimization. (7d1634ae9)	CCTBX commit	Sat, 4 May 2019 19:19:55 +0800	1861 lines
[git/cctbx] master: sequence_cif: update tests to use model class (a5833139f)	CCTBX commit	Fri, 3 May 2019 17:12:27 -0700	584 lines
[git/cctbx] master: sequence_cif: add all residues to _entity_poly_seq.mon_id (6795b490f)	CCTBX commit	Fri, 3 May 2019 17:11:48 -0700	89 lines
[git/cctbx] master: Reapply f83b17271c30e8a7aefc59cb6dc09e6e1b78d51d to new location (1e37191b7)	CCTBX commit	Fri, 3 May 2019 14:41:55 -0700	125 lines
[git/cctbx] master: Move mmCIF output of sequence loops (85158210b)	CCTBX commit	Fri, 3 May 2019 14:41:55 -0700	3158 lines
[git/cctbx] master: mmtbx.prepare_pdb_deposition: always construct geometry restraints manager (548c8633b)	CCTBX commit	Fri, 3 May 2019 14:41:55 -0700	93 lines
[git/cctbx] master: mmtbx.prepare_pdb_depostion: add PDB interpretation parameters for restraints and links (76a05b4da)	CCTBX commit	Fri, 3 May 2019 14:41:55 -0700	118 lines
[git/cctbx] master: DataManager: unset stop_for_uknowns, no longer needed (bf8c7d7be)	CCTBX commit	Fri, 3 May 2019 14:41:55 -0700	84 lines
[git/cctbx] master: Add restraints to mmCIF output from mmtbx.prepare_pdb_deposition (d9861bed3)	CCTBX commit	Fri, 3 May 2019 14:41:55 -0700	110 lines
[git/cctbx] master: Comparama: more arrows, more color control. (20be6745a)	CCTBX commit	Fri, 3 May 2019 14:34:17 -0700	249 lines
[git/cctbx] master: LV: Stub for CCs. (6e2a1d2e3)	CCTBX commit	Fri, 3 May 2019 10:44:29 -0700	849 lines
[git/cctbx] master: Automatic scaling of radii to ensure smallest radius is 0.25*largest radius (c5ca1309c)	CCTBX commit	Fri, 3 May 2019 17:56:44 +0100	282 lines
[git/cctbx] master: Return NaN if NaN submitted to roundoff() rather than crashing on Python3 (471dcb25d)	CCTBX commit	Fri, 3 May 2019 14:26:01 +0100	84 lines
[git/dxtbx] master: enable proper pre-commits for dxtbx (b47ddc2)	DXTBX commit	Fri, 3 May 2019 12:39:55 +0100	143 lines
[git/cctbx] master: Add get_sites_frac method (1c6e68e97)	CCTBX commit	Fri, 3 May 2019 15:48:44 +0800	84 lines
[git/cctbx] master: Tool to find reserved names (334ca5589)	CCTBX commit	Fri, 3 May 2019 07:42:18 +0100	154 lines
[git/cctbx] master: Add delay before loading file for update (0c9f39f9d)	CCTBX commit	Thu, 2 May 2019 22:34:08 -0700	84 lines
[git/cctbx] master: Update README.md (1b6a0061a)	CCTBX commit	Thu, 2 May 2019 15:39:24 -0700	136 lines
[git/cctbx] master: Bug fix for unknown miller array type FOM label formatting on colour gradient chart (130a6cd07)	CCTBX commit	Thu, 2 May 2019 18:07:26 +0100	548 lines
[git/cctbx] master: Partially Revert "Merge pull request #317 from msgpack_as_default" (57ca8299e)	CCTBX commit	Thu, 2 May 2019 09:37:10 -0700	1565 lines
[git/cctbx] master: Clean clutter (59ba24436)	CCTBX commit	Thu, 2 May 2019 09:28:25 -0700	85 lines
[git/dxtbx] master: Combine all __future__ imports into one statement (8094491)	DXTBX commit	Thu, 2 May 2019 15:06:24 +0100	112 lines
[git/cctbx] master: Sort chains on resno and chain ID (bf61dbc6d)	CCTBX commit	Thu, 2 May 2019 08:01:58 -0600	288 lines
[git/cctbx] master: fix typo (5700dc6db)	CCTBX commit	Thu, 2 May 2019 05:45:59 -0700	88 lines
[git/cctbx] master: fix missing set of chain ID (7293edca6)	CCTBX commit	Thu, 2 May 2019 05:03:49 -0700	116 lines
[git/cctbx] master: Merge #316: Implement parts of mmtbx.TLS in C++ (2de01b24c)	CCTBX commit	Thu, 2 May 2019 11:49:07 +0100	171 lines
[git/cctbx] master: change pytest tests into libtbx tests. register in mmtbx.run_tests. (eee7382aa)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	81 lines
[git/cctbx] master: remove unused imports. add from __future__ import division. remove unused functions. fix typo in tests. (347e21b43)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	340 lines
[git/cctbx] master: c++ implementation of convenience classes for manipulating TLS matrices and extracting Us. allows multi-dataset usage of TLS matrices. includes boost::python wrapper (mmtbx/tls/utils.py). includes associated tests in pytest. (b2331ec66)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	89 lines
[git/cctbx] master: clean clutter (trailing whitespace) (ce4e7d3b0)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	73 lines
[git/cctbx] master: add missing assert statements in tests (f9070af05)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	127 lines
[git/cctbx] master: Initialise member data in constructors rather than header files. Move function definitions to serparate cpp files rather than defining in header. Remove unnecessary includes. (3d8509456)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	103 lines
[git/cctbx] master: convert 4-space indents to 2-space indents. (d60159532)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	108 lines
[git/cctbx] master: c++ implementation of decomposition of TLS matrices into physical motions (Urzhumtsev 2016; mmtbx/tls/analysis.py) with boost::python wrapper. incorporate c++ implementation of decomposition into mmtbx/tls/analysis.py. add to tests, checking against python implementation. (9c9ff218f)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	95 lines
[git/cctbx] master: add pytest discovery to mmtbx/run_tests.py (bec02c711)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	95 lines
[git/cctbx] master: fix typo in mmtbx/tls/analysis.py (8cc18a3ab)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	86 lines
[git/cctbx] master: python class with c++ optimiser for fitting an arbitrary combination of (tls) modes against refined Us from multiple datasets. includes boost::python wrapper and pytest tests. (8c3dcf438)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	86 lines
[git/cctbx] master: refactor mmtbx/tls/optimise_amplitudes (b84037627)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	778 lines
[git/cctbx] master: rename tests in mmtbx to follow libtbx convention (current naming is picked up by pytest discovery, with these tests being incompatible with pytest, causing subsquent failures). change documentation and import statements involving these test modules to compensate. (a53bb2af4)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	114 lines
[git/cctbx] master: changes for windows compatibility. change and/or to &&/\|\|. (8bf8e6fa2)	CCTBX commit	Wed, 1 May 2019 23:02:07 -0700	586 lines
[git/cctbx] master: Skip chain_type in extract_unique_part_of_hierarchy because it could be mixed (8365b54ca)	CCTBX commit	Wed, 1 May 2019 18:52:34 -0700	154 lines
[git/cctbx] master: Remove unused import (98e178ce7)	CCTBX commit	Wed, 1 May 2019 18:29:54 -0600	84 lines
[git/cctbx] master: allow optimization of molecule in extracting ncs au (961055df3)	CCTBX commit	Wed, 1 May 2019 17:02:06 -0600	382 lines
[git/cctbx] master: Clean clutter Print label of displayed miller array (ab1a63497)	CCTBX commit	Wed, 1 May 2019 19:25:33 +0100	817 lines
[git/cctbx] master: Bug fix: filter out noise (25738dc4a)	CCTBX commit	Wed, 1 May 2019 20:20:07 +0800	121 lines
[git/cctbx] master: Avoid setting vdw radius to None in rare cases of unknown atom types (9839e81ba)	CCTBX commit	Wed, 1 May 2019 09:57:45 +0800	127 lines
[git/cctbx] master: added ReadMe (4fefcb2aa)	CCTBX commit	Tue, 30 Apr 2019 23:24:29 +0100	309 lines

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