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CCTBX-COMMIT Archives


November 2016


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Jenkins 5a cctbx Tests build 3552 Unstable (1 message)
Jenkins 5a cctbx Tests build 3554 Fixed (1 message)
Jenkins 5a cctbx Tests build 3574 Still Unstable (1 message)
[git/cctbx] master: Add new commands. Mostly skeleton. (70dfbd3) (1 message)
[git/cctbx] master: Add optmization unittest. In progress. (7fd9c42) (1 message)
[git/cctbx] master: Added a feature for Amber to display deviations from ideals (70e393f) (1 message)
[git/cctbx] master: Amber don't working for ensemble refinement (f8e5b1d) (1 message)
[git/cctbx] master: Base packages: reverted workaround for 2.7.12 for macOS; Python was reverted to 2.7.8 from 2.7.12 due to issues on Debian/Ubuntu and macOS (22b7727) (1 message)
[git/cctbx] master: bug fix isPlatformLinux() and isPlatformWindows() (8f4f0e6) (1 message)
[git/cctbx] master: Bugfix (6a889fd) (1 message)
[git/cctbx] master: code to test Amber in BuildBot (0d93c4a) (1 message)
[git/cctbx] master: D'oh (c52c2d9) (1 message)
[git/cctbx] master: D'oh 2 (fde0ddf) (1 message)
[git/cctbx] master: Fix bug argument error at CLIs. Severe. Update prime if spotted. (eb53a2c) (1 message)
[git/cctbx] master: Fix syntax error (b3ea688) (1 message)
[git/cctbx] master: Fix to get appropriate min_spot_size in spot finding for the PAD-like JHSim images (46002b5) (1 message)
[git/cctbx] master: FormatSMVADSC and children do not understand JHSim images (bb30dcd) (1 message)
[git/cctbx] master: glyco linking test (da562e3) (1 message)
[git/cctbx] master: In registry; get() calls setup(); tool to show matching formats (2611b66) (1 message)
[git/cctbx] master: Make the ADC offset a class variable. This is then easily overridden by subclassing, e.g. in a custom format that lives in ~/.dxtbx (c998ec1) (1 message)
[git/cctbx] master: merging_statistics: updated quality_table to match new order of columns after insertion of cc_one_half_significance and cc_one_half_critical_value (80c2df7) (1 message)
[git/cctbx] master: molprobity: bug fix for KeyError crash when creating kinemage file with export_molprobity_result_as_kinemage (5b191a4) (1 message)
[git/cctbx] master: Now recurses the tree (912ce65) (1 message)
[git/cctbx] master: propogate return_n_refl parameter in use_binning mode (92bd32d) (1 message)
[git/cctbx] master: Revert back to python 2.7.8 until SSL issues introduced in 2.7.9 are worked out. (33473ae) (1 message)
[git/cctbx] master: simplified calculation of CC1/2 significance: only need to calculate critical value and compare that with r (c1973ef) (1 message)
[git/cctbx] master: single quotes rather than double quotes to avoid messed up string (982a94e) (1 message)
[git/cctbx] master: small bug fix in linking (e07c41c) (1 message)
[git/cctbx] master: Stub for considering Rama fixes in SS elements with stricter RMSD cutoffs. (e1ed84f) (1 message)
[git/cctbx] master: Tidy up and added CIS group limit (53e2d7b) (1 message)
[git/cctbx] master: todo comment added (447a0f9) (1 message)
[git/cctbx] master: update chain_comparison.py in git (a857ee7) (1 message)
[git/cctbx] master: Update ignore list (3d84214) (1 message)
[git/cctbx] master: Update output for print integration pickles (0d79d4b) (1 message)
[git/cctbx] master: Update SVN references to GIT (96ea310) (1 message)
[git/cctbx] master: update tst_chain_comparison.py in git (9410b57) (1 message)
[git/cctbx] master: weighted bond/angle rmsd and rmsZ (613165b) (1 message)

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Subject Sorted by Subject, Most Recent First

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Date

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New Thread

Jenkins 5a cctbx Tests build 3552 Unstable

Jenkins 5a cctbx Tests build 3552 Unstable

Jenkins Build Server (Diamond)

Wed, 23 Nov 2016 17:02:16 +0000

40 lines

New Thread

Jenkins 5a cctbx Tests build 3554 Fixed

Jenkins 5a cctbx Tests build 3554 Fixed

Jenkins Build Server (Diamond)

Wed, 23 Nov 2016 17:36:59 +0000

35 lines

New Thread

Jenkins 5a cctbx Tests build 3574 Still Unstable

Jenkins 5a cctbx Tests build 3574 Still Unstable

Jenkins Build Server (Diamond)

Wed, 30 Nov 2016 13:42:46 +0000

47 lines

New Thread

[git/cctbx] master: Add new commands. Mostly skeleton. (70dfbd3)

[git/cctbx] master: Add new commands. Mostly skeleton. (70dfbd3)

CCTBX Commit via DLS Jenkins

Tue, 29 Nov 2016 16:41:24 -0800

788 lines

New Thread

[git/cctbx] master: Add optmization unittest. In progress. (7fd9c42)

[git/cctbx] master: Add optmization unittest. In progress. (7fd9c42)

CCTBX Commit via DLS Jenkins

Tue, 29 Nov 2016 16:42:45 -0800

131 lines

New Thread

[git/cctbx] master: Added a feature for Amber to display deviations from ideals (70e393f)

[git/cctbx] master: Added a feature for Amber to display deviations from ideals (70e393f)

CCTBX Commit via DLS Jenkins

Mon, 28 Nov 2016 13:22:48 -0800

199 lines

New Thread

[git/cctbx] master: Amber don't working for ensemble refinement (f8e5b1d)

[git/cctbx] master: Amber don't working for ensemble refinement (f8e5b1d)

CCTBX Commit via DLS Jenkins

Wed, 23 Nov 2016 16:33:33 -0800

78 lines

New Thread

[git/cctbx] master: Base packages: reverted workaround for 2.7.12 for macOS; Python was reverted to 2.7.8 from 2.7.12 due to issues on Debian/Ubuntu and macOS (22b7727)

[git/cctbx] master: Base packages: reverted workaround for 2.7.12 for macOS; Python was reverted to 2.7.8 from 2.7.12 due to issues on Debian/Ubuntu and macOS (22b7727)

CCTBX Commit via DLS Jenkins

Fri, 25 Nov 2016 10:42:00 -0500

185 lines

New Thread

[git/cctbx] master: bug fix isPlatformLinux() and isPlatformWindows() (8f4f0e6)

[git/cctbx] master: bug fix isPlatformLinux() and isPlatformWindows() (8f4f0e6)

CCTBX Commit via DLS Jenkins

Tue, 22 Nov 2016 17:48:01 +0000

93 lines

New Thread

[git/cctbx] master: Bugfix (6a889fd)

[git/cctbx] master: Bugfix (6a889fd)

CCTBX Commit via DLS Jenkins

Wed, 23 Nov 2016 08:01:20 +0000

77 lines

New Thread

[git/cctbx] master: code to test Amber in BuildBot (0d93c4a)

[git/cctbx] master: code to test Amber in BuildBot (0d93c4a)

CCTBX Commit via DLS Jenkins

Wed, 23 Nov 2016 15:37:15 -0800

104 lines

New Thread

[git/cctbx] master: D'oh (c52c2d9)

[git/cctbx] master: D'oh (c52c2d9)

CCTBX Commit via DLS Jenkins

Wed, 23 Nov 2016 17:08:33 +0000

74 lines

New Thread

[git/cctbx] master: D'oh 2 (fde0ddf)

[git/cctbx] master: D'oh 2 (fde0ddf)

CCTBX Commit via DLS Jenkins

Wed, 23 Nov 2016 17:33:59 +0000

74 lines

New Thread

[git/cctbx] master: Fix bug argument error at CLIs. Severe. Update prime if spotted. (eb53a2c)

[git/cctbx] master: Fix bug argument error at CLIs. Severe. Update prime if spotted. (eb53a2c)

CCTBX Commit via DLS Jenkins

Tue, 29 Nov 2016 16:24:09 -0800

277 lines

New Thread

[git/cctbx] master: Fix syntax error (b3ea688)

[git/cctbx] master: Fix syntax error (b3ea688)

CCTBX Commit via DLS Jenkins

Mon, 28 Nov 2016 11:09:15 +0000

77 lines

New Thread

[git/cctbx] master: Fix to get appropriate min_spot_size in spot finding for the PAD-like JHSim images (46002b5)

[git/cctbx] master: Fix to get appropriate min_spot_size in spot finding for the PAD-like JHSim images (46002b5)

CCTBX Commit via DLS Jenkins

Tue, 29 Nov 2016 14:32:23 +0000

94 lines

New Thread

[git/cctbx] master: FormatSMVADSC and children do not understand JHSim images (bb30dcd)

[git/cctbx] master: FormatSMVADSC and children do not understand JHSim images (bb30dcd)

CCTBX Commit via DLS Jenkins

Tue, 29 Nov 2016 14:07:05 +0000

79 lines

New Thread

[git/cctbx] master: glyco linking test (da562e3)

[git/cctbx] master: glyco linking test (da562e3)

CCTBX Commit via DLS Jenkins

Tue, 22 Nov 2016 18:57:16 +0000

434 lines

New Thread

[git/cctbx] master: In registry; get() calls setup(); tool to show matching formats (2611b66)

[git/cctbx] master: In registry; get() calls setup(); tool to show matching formats (2611b66)

CCTBX Commit via DLS Jenkins

Tue, 29 Nov 2016 09:43:59 +0000

111 lines

New Thread

[git/cctbx] master: Make the ADC offset a class variable. This is then easily overridden by subclassing, e.g. in a custom format that lives in ~/.dxtbx (c998ec1)

[git/cctbx] master: Make the ADC offset a class variable. This is then easily overridden by subclassing, e.g. in a custom format that lives in ~/.dxtbx (c998ec1)

CCTBX Commit via DLS Jenkins

Tue, 29 Nov 2016 14:48:57 +0000

104 lines

New Thread

[git/cctbx] master: merging_statistics: updated quality_table to match new order of columns after insertion of cc_one_half_significance and cc_one_half_critical_value (80c2df7)

[git/cctbx] master: merging_statistics: updated quality_table to match new order of columns after insertion of cc_one_half_significance and cc_one_half_critical_value (80c2df7)

CCTBX Commit via DLS Jenkins

Wed, 30 Nov 2016 11:29:12 -0800

78 lines

New Thread

[git/cctbx] master: molprobity: bug fix for KeyError crash when creating kinemage file with export_molprobity_result_as_kinemage (5b191a4)

[git/cctbx] master: molprobity: bug fix for KeyError crash when creating kinemage file with export_molprobity_result_as_kinemage (5b191a4)

CCTBX Commit via DLS Jenkins

Wed, 30 Nov 2016 14:59:30 -0800

79 lines

New Thread

[git/cctbx] master: Now recurses the tree (912ce65)

[git/cctbx] master: Now recurses the tree (912ce65)

CCTBX Commit via DLS Jenkins

Tue, 29 Nov 2016 09:48:05 +0000

114 lines

New Thread

[git/cctbx] master: propogate return_n_refl parameter in use_binning mode (92bd32d)

[git/cctbx] master: propogate return_n_refl parameter in use_binning mode (92bd32d)

CCTBX Commit via DLS Jenkins

Wed, 23 Nov 2016 11:10:57 +0000

108 lines

New Thread

[git/cctbx] master: Revert back to python 2.7.8 until SSL issues introduced in 2.7.9 are worked out. (33473ae)

[git/cctbx] master: Revert back to python 2.7.8 until SSL issues introduced in 2.7.9 are worked out. (33473ae)

CCTBX Commit via DLS Jenkins

Tue, 22 Nov 2016 22:44:28 +0000

81 lines

New Thread

[git/cctbx] master: simplified calculation of CC1/2 significance: only need to calculate critical value and compare that with r (c1973ef)

[git/cctbx] master: simplified calculation of CC1/2 significance: only need to calculate critical value and compare that with r (c1973ef)

CCTBX Commit via DLS Jenkins

Wed, 23 Nov 2016 16:52:48 +0000

103 lines

New Thread

[git/cctbx] master: single quotes rather than double quotes to avoid messed up string (982a94e)

[git/cctbx] master: single quotes rather than double quotes to avoid messed up string (982a94e)

CCTBX Commit via DLS Jenkins

Tue, 22 Nov 2016 09:38:00 +0000

86 lines

New Thread

[git/cctbx] master: small bug fix in linking (e07c41c)

[git/cctbx] master: small bug fix in linking (e07c41c)

CCTBX Commit via DLS Jenkins

Wed, 30 Nov 2016 14:36:03 -0800

104 lines

New Thread

[git/cctbx] master: Stub for considering Rama fixes in SS elements with stricter RMSD cutoffs. (e1ed84f)

[git/cctbx] master: Stub for considering Rama fixes in SS elements with stricter RMSD cutoffs. (e1ed84f)

CCTBX Commit via DLS Jenkins

Wed, 23 Nov 2016 01:21:26 +0000

433 lines

New Thread

[git/cctbx] master: Tidy up and added CIS group limit (53e2d7b)

[git/cctbx] master: Tidy up and added CIS group limit (53e2d7b)

CCTBX Commit via DLS Jenkins

Wed, 23 Nov 2016 16:34:51 -0800

131 lines

New Thread

[git/cctbx] master: todo comment added (447a0f9)

[git/cctbx] master: todo comment added (447a0f9)

CCTBX Commit via DLS Jenkins

Sat, 26 Nov 2016 09:12:22 -0800

74 lines

New Thread

[git/cctbx] master: update chain_comparison.py in git (a857ee7)

[git/cctbx] master: update chain_comparison.py in git (a857ee7)

CCTBX Commit via DLS Jenkins

Wed, 30 Nov 2016 14:22:57 -0700

919 lines

New Thread

[git/cctbx] master: Update ignore list (3d84214)

[git/cctbx] master: Update ignore list (3d84214)

CCTBX Commit via DLS Jenkins

Wed, 23 Nov 2016 08:53:05 +0000

752 lines

New Thread

[git/cctbx] master: Update output for print integration pickles (0d79d4b)

[git/cctbx] master: Update output for print integration pickles (0d79d4b)

CCTBX Commit via DLS Jenkins

Tue, 29 Nov 2016 16:17:59 -0800

219 lines

New Thread

[git/cctbx] master: Update SVN references to GIT (96ea310)

[git/cctbx] master: Update SVN references to GIT (96ea310)

CCTBX Commit via DLS Jenkins

Tue, 29 Nov 2016 12:34:02 +0000

309 lines

New Thread

[git/cctbx] master: update tst_chain_comparison.py in git (9410b57)

[git/cctbx] master: update tst_chain_comparison.py in git (9410b57)

CCTBX Commit via DLS Jenkins

Wed, 30 Nov 2016 14:30:42 -0700

92 lines

New Thread

[git/cctbx] master: weighted bond/angle rmsd and rmsZ (613165b)

[git/cctbx] master: weighted bond/angle rmsd and rmsZ (613165b)

CCTBX Commit via DLS Jenkins

Mon, 28 Nov 2016 15:05:22 -0800

386 lines

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