Dear Manuel,
>
> Thanks, that was really helpful. One last question, I'm using the -mporder option, so I need the slspec.txt file. How I can create it from the combination of the two acquisitions? Thanks in advance.
The slice acquisition scheme needs to be the same for the two acquisitions, so it is enough to create it from one of them. If you use dcm2niix there should have been a .json file created as part of the conversion. There are instructions for how to use that .json file to make your slspec.txt file here (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/eddy/Faq#How_should_my_--slspec_file_look.3F).
Jesper
>
> Regards,
>
> Manuel
|