Hi Matthew,
After modification the job will now start locally without fatal errors but it won’t submit to our grid (Son of Grid Engine 8.1.7). I now commented lines 92-98 and all is well again.
Diederick
On 22 Jul 2014, at 12:45, Matthew Webster <[log in to unmask]> wrote:
> Hi Diederick,
> Can you modify the line in $FSLDIR/bin/fsl_sub reading:
>
> echo "Warning: job submission on a cluster node attempted, running without submission" >&2
>
> to
>
> echo "Warning: job submission on a cluster node attempted, running without submission" >&1
>
> and let me know if that solves your problem?
>
> Kind Regards
> Matthew
>
>> Hi,
>>
>> Did this latest version update include changes to fsl_sub? 5.0.6 runs fine on our SGE grid while Feat in 5.0.7 fails at submission with the error
>>
>> Warning: job submission on a cluster node attempt, running locally without submission
>>
>> FATAL ERROR ENCOUNTERED
>>
>> Cheers,
>>
>> Diederick
>>
>>
>>
>> On 14 Jul 2014, at 12:44, Matthew Webster <[log in to unmask]> wrote:
>>
>>> FSL 5.0.7 has been released.
>>>
>>> * The analysis options for lower-level FEAT have been simplified to match changes in the processing pipeline
>>> * FSL can now be compiled on the latest version of OSX ( using LLVM )
>>> * Improvements have been made to the accuracy of POSSUM for a range of smaller voxel sizes and large motions.
>>> * oxford_asl: Corrected the values for inversion efficiency for pASL and cASL data, correct assignment of default BAT value for cASL (now matches with usage).
>>> * Connectivity-based parcellation atlases have been added, kindly provided by Rogier B. Mars.
>>>
>>> The full distribution can be downloaded from
>>>
>>> http://www.fmrib.ox.ac.uk/fsldownloads/
>>>
>>> either by the installer script or direct download.
>>>
>>> while incremental patches from previous FSL 5 versions can be downloaded from
>>>
>>> http://www.fmrib.ox.ac.uk/fsldownloads/patches
>>>
>>> A patch for Debian/Ubuntu should be available sometime soon, courtesy of Michael Hanke.
>>>
>>> Kind Regards
>>>
>>> Matthew
>>
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