Hi ,
I execute the following commands to segment brain stem :
run_first_all -i CON01 -s BrStem -o CON01
run_first_all -i CON02 -s BrStem -o CON02
And the first command is normal while the second one doesn't get BrainStem with the following error :
shixinfa@shixinfa:/media/E/FIRST$ cat CON01.logs/*.e*
shixinfa@shixinfa:/media/E/FIRST$ cat CON02.logs/*.e*
Segmentation fault (core dumped)
** ERROR (nifti_image_read): failed to find header file for 'CON02-BrStem_corr'
** ERROR: nifti_image_open(CON02-BrStem_corr): bad header info
ERROR: failed to open file CON02-BrStem_corr
ERROR: Could not open image CON02-BrStem_corr
Image Exception : #22 :: Failed to read volume CON02-BrStem_corr
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted (core dumped)
** ERROR (nifti_image_read): failed to find header file for 'CON02-BrStem_first'
** ERROR: nifti_image_open(CON02-BrStem_first): bad header info
ERROR: failed to open file CON02-BrStem_first
ERROR: Could not open image CON02-BrStem_first
Image Exception : #22 :: Failed to read volume CON02-BrStem_first
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted (core dumped)
** ERROR (nifti_image_read): failed to find header file for 'CON02_all_fast_origsegs'
** ERROR: nifti_image_open(CON02_all_fast_origsegs): bad header info
ERROR: failed to open file CON02_all_fast_origsegs
ERROR: Could not open image CON02_all_fast_origsegs
Image Exception : #22 :: Failed to read volume CON02_all_fast_origsegs
Aborted
Could you tell me how to correct it ? And I have 36 subjects , how I should do to avoid the error ? My version of FSL is 4.1.9 , and if I upgrade it to 5.0 ,may it avoid the error ?
Thand you in advance .
Xin-Fa Shi .
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