Thank you Juan, Niels, and Michael.
Looks like I was just missing the fsl-first-data package. I wish this was just part of the initial install, because to be honest its not an easy matter to figure out.
Though as Juan pointed out I should be able to get the FSLDIR when I use: echo $FSLDIR However, this is not the case. Is there something special about the way fsl is installed with the neurodebian?
Cheers,
Vic
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