Hello FSL experts,
So I have been trying to use sienax with the -B "betopts" option. However, it is not working. I went through the forum and found some new code sienax_bet, which allows you to run a previous brain extracted T1 image.However it just outputs:
:~/Desktop/Sienax_test$ fsl5.0-sienax GLA_N01_T1_iso.nii.gz -P GLA_N01_T1_iso_brain.nii.gz
/usr/share/fsl/5.0/bin/sienax: 149: shift: can't shift that many
I'm pretty sure there is something I'm doing wrong but I would really appreciate some help.
I'm running Debian Wheezy.
Cheers,
Victor
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