Santosh,
It's probably best to first make sure that in sparky your naming
conforms to sparky conventions. I guess that's what CCPN expects,
and it should also make your life easier in sparky.
Also, probable good to make sure that different residues don't have
the same residue number.e.g. move T1 T2 T3 -> T21 T22 T23 or
whatever is necessary to avoid clashes.
> 1SCb-Ca 65.877 55.690
> T1Cb-Ca 71.873 60.215
do you really use 1S or is that a typo. should be S1?
> SCb-Ca 65.070 56.231
there's no residue number here. how do you expect CCPN to know
that 'S' is the residue name and 'Cb' the atom?
you can use 'rr' to rename resonances in sparky
goodluck, Eiso
Santhosh wrote:
> Hello ppl, i am novice to CCPN. I have been working with Sparky, and I want to convert all of my sparky data to CCPN. So i uploaded a ucsf file and from format convertor i imported the peak list (one that come up when you type lt in sparky).
>
> Since my (solid state) assignments mostly are just identifications of residue types rather than sequential assignments i.e. S1,S2,T1,T1,I1,I2,I3 corresponding to 2 Serines, 2 Thr and 3 Iso in my sequence rather than the positions, when i import it, CCPN reads the numbers as sequence positions. Somehow I am not able to avoid this.
>
> SO thought of posting here, if someone with such an experience could help me.
>
> An test peak list would look like:
>
> ---------------------------------------------
> Assignment w1 w2
>
> 1SCb-Ca 65.877 55.690
> T1Cb-Ca 71.873 60.215
> SCb-Ca 65.070 56.231
> ----------------------------------------------
>
> The first two peaks are read as sequence positions and appear as cb-Ca of the first residue in the protein sequence, while the third peak is only marked and annotations dont even appear.
>
> Hope someone could detail how this is done.
>
> regards
> Santhosh
>
> p.s. If you have experience in importing whole projects, would be nice if you could please detail that as well.
>
>
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