Hi Santhosh,
Do you get any messages in the terminal after importing the peaklist?
Regards
Simon Skinner
Santhosh wrote:
> Hello ppl, i am novice to CCPN. I have been working with Sparky, and I want to convert all of my sparky data to CCPN. So i uploaded a ucsf file and from format convertor i imported the peak list (one that come up when you type lt in sparky).
>
> Since my (solid state) assignments mostly are just identifications of residue types rather than sequential assignments i.e. S1,S2,T1,T1,I1,I2,I3 corresponding to 2 Serines, 2 Thr and 3 Iso in my sequence rather than the positions, when i import it, CCPN reads the numbers as sequence positions. Somehow I am not able to avoid this.
>
> SO thought of posting here, if someone with such an experience could help me.
>
> An test peak list would look like:
>
> ---------------------------------------------
> Assignment w1 w2
>
> 1SCb-Ca 65.877 55.690
> T1Cb-Ca 71.873 60.215
> SCb-Ca 65.070 56.231
> ----------------------------------------------
>
> The first two peaks are read as sequence positions and appear as cb-Ca of the first residue in the protein sequence, while the third peak is only marked and annotations dont even appear.
>
> Hope someone could detail how this is done.
>
> regards
> Santhosh
>
> p.s. If you have experience in importing whole projects, would be nice if you could please detail that as well.
>
--
Simon P Skinner
Protein Chemistry Group
Leiden Institute of Chemistry, Universiteit Leiden
Phone: +31 71 527 6089 / Fax: +31 71 527 4349
E-mail : [log in to unmask]
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