Hi François,
Chainsaw should do the job for you if you input a clustal alignment.
Cheers
David
Le 26 sept. 2011 à 17:44, Francois Berenger a écrit :
> Hello,
>
> I have one bound complexe (a ligand + a protein in holo conformation).
> I also have the apo structure for a very similar protein.
>
> Is there a tool to create a new PDB, whose coordinates are
> taken from the holo structure but residue names and numbers
> are taken from the alo structure (by looking at the corresponding
> residues in the output of a sequence alignment program)?
>
> I thought about doing a script using clustalw for the alignment
> part, but the task seems not trivial.
>
> Thanks a lot,
> Francois.
|