On 09/27/2011 09:55 AM, David Veesler wrote:
> Hi François,
> Chainsaw should do the job for you if you input a clustal alignment.
> Cheers
> David
Thanks! I'm happy I asked. I'll give a try at chainsaw.
Hope to not cut one of my fingers during the process...
> Le 26 sept. 2011 à 17:44, Francois Berenger a écrit :
>
>> Hello,
>>
>> I have one bound complexe (a ligand + a protein in holo conformation).
>> I also have the apo structure for a very similar protein.
>>
>> Is there a tool to create a new PDB, whose coordinates are
>> taken from the holo structure but residue names and numbers
>> are taken from the alo structure (by looking at the corresponding
>> residues in the output of a sequence alignment program)?
>>
>> I thought about doing a script using clustalw for the alignment
>> part, but the task seems not trivial.
>>
>> Thanks a lot,
>> Francois.
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