Whoops, just noticed the PeakSeparator message. To get rid of that we
need to figure out what (other) library is missing. When you have started
up Analysis type the following at the Python prompt:
>>> from cambridge.c import BayesPeakSeparator
Hopefully it will tell you something useful. (If I had to guess, it would
be a missing libgomp, since I think that is the only novel library that
that code uses.)
Wayne
On Fri, 13 Aug 2010, Wayne Boucher wrote:
> Hello,
>
> That is almost certainly that you have version 0.9.7 of the openssl libraries
> and we have 0.9.8. Assuming that is correct, I've put the two libraries
> you'll need at:
>
> http://www.ccpn.ac.uk/download/ccpnmr/lib_linux64/
>
> You can stick those in /usr/lib (well, double check they are not there
> already because I might be wrong in my assumption). If you don't have
> permission to do that then I'd create a lib/ directory in ccpnmr/ (so
> parallel with the bin/ directory) and change the LD_LIBRARY_PATH in the
> bin/analysis script to say:
>
> setenv LD_LIBRARY_PATH
> "/usr/lib64:${CCPNMR_TOP_DIR}/tcl8.5/lib:${CCPNMR_TOP_DIR}/tk8.5
> /lib:${CCPNMR_TOP_DIR}/tcl8.5/lib/Tix8.4.3:${CCPNMR_TOP_DIR}/lib"
>
> (just the last bit is new).
>
> Wayne
>
> On Fri, 13 Aug 2010, Vitaliy wrote:
>
>> Hi,
>> I have downloaded the pre-compiled analysis2.1.5_linux64.tgz and unarchived
>> it. I started analysis and got the following:
>> [vitaliyg@bbcsrv2 bin]$ analysis
>> Model read finished. Duration 1.11647200584
>> Model validity check skipped
>> Error, cannot import BayesPeakSeparator - peak separation will not work.
>> * Warning * Cannot import Python module urllib2.
>> - Please check your SSL libraries.
>> - Submission to to the iCing server will not work.
>> No module named _md5
>> CcpNmr Analysis Version 2.1. Release 5 (Copyright 2003-2010 CCPN)
>> Distribution created Wed Aug 11 17:37:18 2010
>>
>> If you use CcpNmr Analysis, please quote the following reference:
>>
>> Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne
>> Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides
>> and Ernest D. Laue (2005). The CCPN Data Model for NMR Spectroscopy:
>> Development of a Software Pipeline. Proteins 59, 687 - 696.
>>
>> For program documentation the CCPN wiki site is located at:
>> http://sites.google.com/site/ccpnwiki/Home/documentation/ccpnmr-software
>>
>> For help and support visit the mailing list at:
>> http://www.jiscmail.ac.uk/ccpnmr
>>
>> For Python API documentation, tutorials and CCPN web applications visit:
>> http://www.ccpn.ac.uk/
>>
>>>>>
>>
>> From the recent e-mails I thought that the pre-compiled release does not
>> need any tuning...
>>
>> Thank you,
>> Vitaliy
>>
>
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