Jessie,
Just to comfirm the rest of the acquisition orientation: in fslview
where does it place the A&P labels?
Dave Flitney, IT Manager
University of Oxford, FMRIB Centre
JR Hospital, Oxford OX3 9DU
T: 01865 222713 F: 01865 222717
On 3 Dec 2009, at 19:47, Jessie Mathews <[log in to unmask]>
wrote:
> Dear FSL Experts,
>
> Our data is currently in neurological orientation, as confirmed by a
> Vitamin E capsule (we
> placed the Vit. E pill on the left side of the head and fslview
> shows the pill on the left side
> of the screen).
>
> Using fslorient -getorient, however, fsl thinks that our data is in
> radiological orientation.
> Additionally, the labels in fslview show the opposite from what they
> should - the left side is
> labelled as right.
>
> How does this effect my interpretation of data? Can I simply just
> swap left for right in my
> results? For example, switch positive x coordinates with negative
> ones? Or are my results
> uninterpretable as is. Please let me know if there is a solution for
> this.
>
> Thank you in advance.
>
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