But if you do ldd on a program, you should see it, e.g.
/xtal/ccp4_CVS/ccp4/bin$ ldd pdbset
linux-vdso.so.1 => (0x00007fffcc3fd000)
libccp4f.so => /xtal/ccp4_CVS/ccp4/lib/libccp4f.so (0x00007f66c150c000)
libccp4c.so => /xtal/ccp4_CVS/ccp4/lib/libccp4c.so (0x00007f66c12de000)
libmmdb.so => /xtal/ccp4_CVS/ccp4/lib/libmmdb.so (0x00007f66c0feb000)
(truncated for brevity). You normally run ldd on the program, since
running the program is when you want to resolve symbol references.
I've never tried ldd on libraries before, but I get the same as you.
libccp4f.so does use e.g. libmmdb (try e.g. nm libccp4f.so | grep mmdb)
but the symbols don't need to be resolved at the library level.
HTH
Martyn
On Thu, 2009-02-26 at 12:26 +0100, Justin Lecher wrote:
> Hi all,
>
> hopefully reaches some devs who can help me.
>
> I try to build shared libs for ccp4 using the configure command
>
> ./configure \
> --onlylibs \
> --with-shared-libs \
> --with-fftw=/usr \
> --with-warnings \
> --disable-cctbx \
> --tmpdir="${TMPDIR}" \
> linux
>
> This should build the libs as shared libs and not statically linked. Am
> I right?
> But what I see is following
>
> $ ldd libccp4c.so
> statically linked
>
> $ ldd libccp4f.so
> statically linked
>
> ...
>
> Am I doing something wrong or is this a build system problem? I attach
> the full build.log
>
> Thanks,
>
> justin
>
>
>
>
> plain text document attachment (build.log)
> [32;01m*[0m You need one of these Fortran Compilers: g77 gfortran ifc
> [32;01m*[0m Installed are: gfortran ifort
> >>> Unpacking source...
> >>> Unpacking ccp4-6.1.1-core-src.tar.gz to /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work
> [32;01m*[0m Applying upstream patches ...
> [32;01m*[0m Done.
>
> [32;01m*[0m Applying Gentoo patches ...
> [32;01m*[0m 6.1.1-dont-make-dirs-in-configure.patch ...
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m pass-clipper-enablevals.patch ...
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m 6.0.2-ppc-double-define-gerror.patch ...
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m 6.1.1-clipper-mmdbold-ggc-4.3.patch ...
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Done.
>
> [32;01m*[0m Using GNU config files from /usr/share/libtool
> [32;01m*[0m Updating lib/ssm/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating lib/ccif/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating lib/fftw/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating lib/rxdispencer/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating lib/DiffractionImage/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating lib/clipper/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating src/pisa/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating src/rapper/gc7.0/libatomic_ops-1.2/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating src/rapper/gc7.0/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating src/rapper/libxml2/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating src/rapper/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/Mosflm/cbf/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/Mosflm/jpg/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/Mosflm/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/Rotgen/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/xdl_view/src/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/libjwc/libjwc_c/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/libjwc/libjwc_f/config.sub
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating lib/ssm/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating lib/ccif/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating lib/fftw/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating lib/rxdispencer/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating lib/DiffractionImage/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating lib/clipper/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating src/pisa/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating src/rapper/gc7.0/libatomic_ops-1.2/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating src/rapper/gc7.0/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating src/rapper/libxml2/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating src/rapper/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/Mosflm/cbf/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/Mosflm/jpg/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/Mosflm/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/Rotgen/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/xdl_view/src/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/libjwc/libjwc_c/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> [32;01m*[0m Updating x-windows/libjwc/libjwc_f/config.guess
> [A[191C [34;01m[ [32;01mok[34;01m ][0m
> >>> Source unpacked in /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work
> >>> Compiling source in /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 ...
> with_fftw='/usr'
> srcdir bindir libdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> OK, setting up for a system type of `linux'...
>
> ! onlylibs build requested
> !
> ! Only the libraries will be configured and built.
> ! Configuration of x-windows programs, phaser and mapslicer
> ! command library have been implicitly disabled.
> ! (Some messages below regarding re-enabling these options
> ! are likely to be misleading.)
>
> ! Using gnu fortran compiler. If you have an old fortran compiler, you may be better
> ! off using f2c, see --with-f2c option.
>
> ! The x-windows programs will not be installed.
> ! If you want the x-windows programs to be installed re-run
> ! configure with the --enable-x flag.
>
> The CCIF library will be built and installed.
> This has been tested on the most common systems, but if
> you have problems, use the --disable-ccif flag.
>
> Installation of the CCTBX library has been suppressed.
> Some functionality will be lost.
>
> Installation of Phaser has been suppressed.
>
> The LAPACK linear algebra package will be included in the installation.
> Configure will search for existing LAPACK and BLAS libraries on
> on your system - if a version of LAPACK is not found then the NetLib
> version will be built for you automatically.
> If you want NetLib LAPACK and BLAS to be used regardless of
> system libraries then rerun configure using --with-netlib-lapack
>
> To disable inclusion of LAPACK, use the --disable-lapack flag
> (This is not recommended as some programs will fail to build)
>
> Building of the CCP4i MapSlicer command library has been suppressed.
> As a result you will not be able to use the MapSlicer viewer.
> ! You have specified a non-default Fortran compiler (gfortran).
> This probably only makes sense if you have made the appropriate
> changes to the Fortran-C interface routines.
>
> testing linux ABI using: x86_64-pc-linux-gnu-gcc
> $ 64-bit
>
> Testing Fortran90 support.
> Fortran90 support confirmed (needed for latest Refmac and Molrep)
> checking for ctime...
> yes
>
> Testing command for running m4 (m4 -D_gfort=1) ... ok
>
> Running separate configure for CCIF library.
>
> Updating modification times for configuration files
> Please wait...
> ...done.
> loading cache /tmp/28614.cache_file
>
>
> CCCCCC CCCCCC IIII FFFFFFFFFF
> CCCCCCCCCC CCCCCCCCCC IIII FFFFFFFFFF
> CC C CC C II FF
> CC CC II FF
> CC CC II FFFFF
> CC CC II FFFFF
> CC CC II FF
> CC C CC C II FF
> CCCCCCCCCC CCCCCCCCC IIII FF
> CCCCCC CCCCC IIII FF
> =======================================================
>
> Fortran programmers' tools for mmCIF
>
> checking host system type... x86_64-unknown-linux-gnu
> checking for gcc... x86_64-pc-linux-gnu-gcc
> checking whether the C compiler (x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC ) works... yes
> checking whether the C compiler (x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC ) is a cross-compiler... no
> checking whether we are using GNU C... yes
> checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
> checking for ranlib... ranlib
> checking for mawk... no
> checking for gawk... gawk
> checking for nm... /usr/bin/nm
> checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
> checking for signal.h... yes
> checking for time.h... yes
> checking for standards.h... no
> checking for assert.h... yes
> checking for unistd.h... checking for unistd.h... yes
> yes
> checking for working const... yes
> checking whether we are using intel C and therefore restrict... no
> checking whether we are using intel C 700 and require __GNUC__... no
> -------------------------------------------------
> Setting up system-dependent stuff
> -------------------------------------------------
>
>
> checking for standards.h... (cached) no
> checking for working non-fixed mmap... yes
> -------------------------------------------------
> Regular expression package stuff
> -------------------------------------------------
> checking for regex.h... yes
> checking out regular expression package... ok
>
> -------------------------------------------------
> *** Configuring CCIF build for shared library ***
> -------------------------------------------------
>
> -------------------------------------------------
> Checking for certain archaic features
> -------------------------------------------------
>
> checking whether we need to define strerror... no
> checking for old-style realloc... no
> checking for old BSD sprintf... no
>
> updating cache /tmp/28614.cache_file
> creating ./config.status
> creating shlib.csh
> creating shlib.sh
> creating Makefile
>
> Returning to main configure.
>
>
> ********* BLAS AND LAPACK CONFIGURATION ***********
>
> Warning: this option has not been extensively tested!
> Please report problems to [log in to unmask]
>
> Guessing names for native/vendor LAPACK and/or BLAS libraries
> on this system
> Possible LAPACK library names for this system:
> liblapack
>
> Searching for libraries with LAPACK and BLAS:
> ...found LAPACK library: /usr/lib64/liblapack.a
> Testing: try to link library against test program
> gfortran -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC -o testlink testlink.f -L/usr/lib64 -llapack
> Link ok - using liblapack from /usr/lib64
>
> * Checking whether we need a separate BLAS library *
> Testing: try linking library against test program
> gfortran -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC -o testlsame lsametst.f -L/usr/lib64 -llapack
> Test program okay - additional separate BLAS not required
> Test C linking for lapack library
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -o testlink testlink.c -L/usr/lib64 -llapack
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/temp/cc3D2jM3.o: In function `main':
> testlink.c:(.text+0x84): undefined reference to `dsyev'
> collect2: ld returned 1 exit status
>
> Linking in LAPACK/BLAS using XLAPACK_LIB="-L/usr/lib64 -llapack"
>
> ***** BLAS AND LAPACK CONFIGURATION FINISHED *******
>
> ********* CLIPPER CONFIGURATION ***********
>
> Updating modification times for configuration files
> Please wait...
> ...done.
>
> configure --enable-shared=yes --with-fftw=/usr FFTW_LIBS="-L/usr/lib -lsrfftw -lsfftw" FFTW_CXXFLAGS="-I/usr/include" --with-mmdb=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --with-ccp4=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --enable-mmdb --enable-cif --enable-ccp4 --enable-minimol --enable-mmdbold --enable-mtz --with-mccp4=/usr --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin --libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking build system type... x86_64-unknown-linux-gnu
> checking host system type... x86_64-unknown-linux-gnu
> checking for style of include used by make... GNU
> checking for gcc... x86_64-pc-linux-gnu-gcc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
> checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... none needed
> checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
> checking for a sed that does not truncate output... /bin/sed
> checking for egrep... grep -E
> checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
> checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
> checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
> checking for BSD-compatible nm... /usr/bin/nm -B
> checking whether ln -s works... yes
> checking how to recognize dependent libraries... pass_all
> checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking dlfcn.h usability... yes
> checking dlfcn.h presence... yes
> checking for dlfcn.h... yes
> checking whether we are using the GNU C++ compiler... yes
> checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
> checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
> checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
> checking whether we are using the GNU Fortran 77 compiler... yes
> checking whether gfortran accepts -g... yes
> checking the maximum length of command line arguments... 1572864
> checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
> checking for objdir... .libs
> checking for ar... ar
> checking for ranlib... ranlib
> checking for strip... strip
> checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
> checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
> checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
> checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
> checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
> checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking whether -lc should be explicitly linked in... no
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... yes
> configure: creating libtool
> appending configuration tag "CXX" to libtool
> checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
> checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
> checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
> checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
> checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
> checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
> checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> appending configuration tag "F77" to libtool
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... yes
> checking for gfortran option to produce PIC... -fPIC
> checking if gfortran PIC flag -fPIC works... yes
> checking if gfortran static flag -static works... yes
> checking if gfortran supports -c -o file.o... yes
> checking whether the gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking whether to enable maintainer-specific portions of Makefiles... no
> checking whether we are using the GNU C++ compiler... (cached) yes
> checking whether x86_64-pc-linux-gnu-g++ accepts -g... (cached) yes
> checking dependency style of x86_64-pc-linux-gnu-g++... (cached) gcc3
> checking whether we are using the GNU C compiler... (cached) yes
> checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes
> checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... (cached) none needed
> checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) gcc3
> checking for ANSI C header files... (cached) yes
> checking for a BSD-compatible install... /usr/bin/install -c
> checking for sqrt in -lm... yes
> checking for CMMDBManager in MMDB... no
> configure: WARNING: assuming library -lmmdb headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src
> checking for ccp4_errno in CCP4... no
> configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -lccp4c headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src
> checking for floor... yes
> checking for pow... yes
> checking for rint... yes
> checking for sqrt... yes
> checking whether time.h and sys/time.h may both be included... yes
> checking utime.h usability... yes
> checking utime.h presence... yes
> checking for utime.h... yes
> checking for struct utimbuf... yes
> configure: creating ./config.status
> config.status: creating Makefile
> config.status: creating clipper/Makefile
> config.status: creating clipper/cctbx/Makefile
> config.status: creating clipper/ccp4/Makefile
> config.status: creating clipper/contrib/Makefile
> config.status: creating clipper/core/Makefile
> config.status: creating clipper/mmdb/Makefile
> config.status: creating clipper/mmdbold/Makefile
> config.status: creating clipper/minimol/Makefile
> config.status: creating clipper/phs/Makefile
> config.status: creating clipper/cif/Makefile
> config.status: creating clipper/cns/Makefile
> config.status: creating clipper/fortran/Makefile
> config.status: creating examples/Makefile
> config.status: creating clipper-config
> config.status: creating macros/Makefile
> config.status: creating dox/Makefile
> config.status: creating config.h
> config.status: executing depfiles commands
>
> Configuration Summary
> ------------------------------
> core: yes
> contrib: yes
> phs: yes
> cns: yes
> mmdb: yes
> mmdbold: yes
> minimol: yes
> cif: yes
> ccp4: yes
> cctbx: no
> fortran: no
>
>
> ***** CLIPPER CONFIGURATION FINISHED *******
>
>
> ********* DIFFRACTION IMAGE LIBRARY CONFIGURATION ***********
>
> Updating modification times for configuration files
> Please wait...
> ...done.
>
> configure --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin --libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib --with-tcl-module --with-pic
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for a thread-safe mkdir -p... /bin/mkdir -p
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking build system type... x86_64-unknown-linux-gnu
> checking host system type... x86_64-unknown-linux-gnu
> checking for style of include used by make... GNU
> checking for gcc... x86_64-pc-linux-gnu-gcc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
> checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
> checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
> checking for a sed that does not truncate output... /bin/sed
> checking for grep that handles long lines and -e... /bin/grep
> checking for egrep... /bin/grep -E
> checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
> checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
> checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
> checking for BSD-compatible nm... /usr/bin/nm -B
> checking whether ln -s works... yes
> checking how to recognize dependent libraries... pass_all
> checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking dlfcn.h usability... yes
> checking dlfcn.h presence... yes
> checking for dlfcn.h... yes
> checking whether we are using the GNU C++ compiler... yes
> checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
> checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
> checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
> checking whether we are using the GNU Fortran 77 compiler... yes
> checking whether gfortran accepts -g... yes
> checking the maximum length of command line arguments... 1572864
> checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
> checking for objdir... .libs
> checking for ar... ar
> checking for ranlib... ranlib
> checking for strip... strip
> checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
> checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
> checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
> checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
> checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
> checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking whether -lc should be explicitly linked in... no
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... yes
> configure: creating libtool
> appending configuration tag "CXX" to libtool
> checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
> checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
> checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
> checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
> checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
> checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
> checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> appending configuration tag "F77" to libtool
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... yes
> checking for gfortran option to produce PIC... -fPIC
> checking if gfortran PIC flag -fPIC works... yes
> checking if gfortran static flag -static works... yes
> checking if gfortran supports -c -o file.o... yes
> checking whether the gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking whether we are using the GNU C++ compiler... (cached) yes
> checking whether x86_64-pc-linux-gnu-g++ accepts -g... (cached) yes
> checking dependency style of x86_64-pc-linux-gnu-g++... (cached) gcc3
> checking for gcc... (cached) x86_64-pc-linux-gnu-gcc
> checking whether we are using the GNU C compiler... (cached) yes
> checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes
> checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed
> checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) gcc3
> checking whether make sets $(MAKE)... (cached) yes
> checking for ANSI C header files... (cached) yes
> checking for python... python
> checking /usr/include/python2.5/Python.h usability... yes
> checking /usr/include/python2.5/Python.h presence... yes
> checking for /usr/include/python2.5/Python.h... yes
> checking tcl.h usability... yes
> checking tcl.h presence... yes
> checking for tcl.h... yes
> checking /home/justin/.gentoo/java-config-2/current-user-vm/include/jni.h usability... yes
> checking /home/justin/.gentoo/java-config-2/current-user-vm/include/jni.h presence... yes
> checking for /home/justin/.gentoo/java-config-2/current-user-vm/include/jni.h... yes
> checking for sqrt in -lm... yes
> configure: creating ./config.status
> config.status: creating Makefile
> config.status: creating CBFlib/Makefile
> config.status: creating CBFlib/src/Makefile
> config.status: creating MAR/Makefile
> config.status: creating Rigaku/Makefile
> config.status: creating Bruker/Makefile
> config.status: creating jpg/Makefile
> config.status: executing depfiles commands
>
> ***** DIFFRACTION IMAGE LIBRARY CONFIGURATION FINISHED *******
>
>
> ********* SSM CONFIGURATION ***********
>
> Updating modification times for configuration files
> Please wait...
> ...done.
>
> configure --enable-shared=yes --with-mmdb=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin --libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking build system type... x86_64-unknown-linux-gnu
> checking host system type... x86_64-unknown-linux-gnu
> checking for style of include used by make... GNU
> checking for gcc... x86_64-pc-linux-gnu-gcc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
> checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
> checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
> checking for a sed that does not truncate output... /bin/sed
> checking for grep that handles long lines and -e... /bin/grep
> checking for egrep... /bin/grep -E
> checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
> checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
> checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
> checking for BSD-compatible nm... /usr/bin/nm -B
> checking whether ln -s works... yes
> checking how to recognize dependent libraries... pass_all
> checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking dlfcn.h usability... yes
> checking dlfcn.h presence... yes
> checking for dlfcn.h... yes
> checking whether we are using the GNU C++ compiler... yes
> checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
> checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
> checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
> checking whether we are using the GNU Fortran 77 compiler... yes
> checking whether gfortran accepts -g... yes
> checking the maximum length of command line arguments... 1572864
> checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
> checking for objdir... .libs
> checking for ar... ar
> checking for ranlib... ranlib
> checking for strip... strip
> checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
> checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
> checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
> checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
> checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
> checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking whether -lc should be explicitly linked in... no
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... yes
> configure: creating libtool
> appending configuration tag "CXX" to libtool
> checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
> checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
> checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
> checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
> checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
> checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
> checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> appending configuration tag "F77" to libtool
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... yes
> checking for gfortran option to produce PIC... -fPIC
> checking if gfortran PIC flag -fPIC works... yes
> checking if gfortran static flag -static works... yes
> checking if gfortran supports -c -o file.o... yes
> checking whether the gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking whether to enable maintainer-specific portions of Makefiles... no
> checking whether we are using the GNU C++ compiler... (cached) yes
> checking whether x86_64-pc-linux-gnu-g++ accepts -g... (cached) yes
> checking dependency style of x86_64-pc-linux-gnu-g++... (cached) gcc3
> checking for ANSI C header files... (cached) yes
> checking for a BSD-compatible install... /usr/bin/install -c
> checking for CMMDBManager in MMDB... no
> configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -lmmdb headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb
> checking for floor... yes
> checking for pow... yes
> checking for rint... yes
> checking for sqrt... yes
> checking for sqrt in -lm... yes
> configure: creating ./config.status
> config.status: creating Makefile
> config.status: executing depfiles commands
>
> ***** SSM CONFIGURATION FINISHED *******
>
>
> ********* RAPPER CONFIGURATION ***********
>
> Updating modification times for configuration files
> Please wait...
> ...done.
>
> configure --enable-shared=yes --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin --libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib --disable-shared
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking for C++ compiler default output file name... a.out
> checking whether the C++ compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C++ compiler... yes
> checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
> checking for style of include used by make... GNU
> checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
> checking for gcc... x86_64-pc-linux-gnu-gcc
> checking whether we are using the GNU C compiler... yes
> checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
> checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
> checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
> checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
> checking for grep that handles long lines and -e... /bin/grep
> checking for egrep... /bin/grep -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking bstring.h usability... no
> checking bstring.h presence... no
> checking for bstring.h... no
> checking build system type... x86_64-unknown-linux-gnu
> checking host system type... x86_64-unknown-linux-gnu
> checking for a sed that does not truncate output... /bin/sed
> checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
> checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
> checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
> checking for BSD-compatible nm... /usr/bin/nm -B
> checking whether ln -s works... yes
> checking how to recognise dependent libraries... file_magic ELF [0-9][0-9]*-bit [LM]SB (shared object|dynamic lib )
> checking dlfcn.h usability... yes
> checking dlfcn.h presence... yes
> checking for dlfcn.h... yes
> checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
> checking whether we are using the GNU Fortran 77 compiler... yes
> checking whether gfortran accepts -g... yes
> checking the maximum length of command line arguments... 32768
> checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
> checking for objdir... .libs
> checking for ar... ar
> checking for ranlib... ranlib
> checking for strip... strip
> checking for file... /usr/bin/file
> checking if x86_64-pc-linux-gnu-gcc static flag works... yes
> checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
> checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
> checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
> checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
> checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> configure: creating libtool
> appending configuration tag "CXX" to libtool
> checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
> checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... no
> checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
> checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
> checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
> checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> appending configuration tag "F77" to libtool
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> checking for gfortran option to produce PIC... -fPIC
> checking if gfortran PIC flag -fPIC works... yes
> checking if gfortran supports -c -o file.o... yes
> checking whether the gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> configure: creating ./config.status
> config.status: creating Makefile
> config.status: WARNING: Makefile.in seems to ignore the --datarootdir setting
> config.status: creating LOOP/Makefile
> config.status: WARNING: LOOP/Makefile.in seems to ignore the --datarootdir setting
> config.status: creating data/Makefile
> config.status: WARNING: data/Makefile.in seems to ignore the --datarootdir setting
> config.status: executing depfiles commands
> === configuring in gc7.0 (/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/src/rapper/gc7.0)
> configure: running /bin/sh ./configure '--prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1' '--enable-shared=yes' '--exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1' '--bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin' '--libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib' '--disable-shared' 'CXX=x86_64-pc-linux-gnu-g++' 'CXXFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -fPIC' 'CC=x86_64-pc-linux-gnu-gcc' 'CFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC' 'F77=gfortran' 'FFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC' --cache-file=/dev/null --srcdir=.
> checking build system type... x86_64-unknown-linux-gnu
> checking host system type... x86_64-unknown-linux-gnu
> checking target system type... x86_64-unknown-linux-gnu
> checking GC version numbers... major=7 minor=0
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking whether to enable maintainer-specific portions of Makefiles... no
> checking for style of include used by make... GNU
> checking for gcc... x86_64-pc-linux-gnu-gcc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
> checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
> checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
> checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes
> checking whether we are using the GNU C++ compiler... yes
> checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
> checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
> checking for ar... ar
> checking for ranlib... ranlib
> checking for a BSD-compatible install... /usr/bin/install -c
> checking for thread model used by GCC... posix
> configure: WARNING: "Explict GC_INIT() calls may be required."
> checking for xlc... no
> checking for dlopen in -ldl... yes
> checking whether to build shared libraries... yes
> checking which machine-dependent code should be used...
> checking for a sed that does not truncate output... /bin/sed
> checking for grep that handles long lines and -e... /bin/grep
> checking for egrep... /bin/grep -E
> checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
> checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
> checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
> checking for BSD-compatible nm... /usr/bin/nm -B
> checking whether ln -s works... yes
> checking how to recognise dependent libraries... pass_all
> checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking dlfcn.h usability... yes
> checking dlfcn.h presence... yes
> checking for dlfcn.h... yes
> checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
> checking whether we are using the GNU Fortran 77 compiler... yes
> checking whether gfortran accepts -g... yes
> checking the maximum length of command line arguments... 32768
> checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
> checking for objdir... .libs
> checking for ar... (cached) ar
> checking for ranlib... (cached) ranlib
> checking for strip... strip
> checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
> checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
> checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
> checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
> checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
> checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> configure: creating libtool
> appending configuration tag "CXX" to libtool
> checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
> checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
> checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
> checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
> checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
> checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
> checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> appending configuration tag "F77" to libtool
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> checking for gfortran option to produce PIC... -fPIC
> checking if gfortran PIC flag -fPIC works... yes
> checking if gfortran static flag -static works... yes
> checking if gfortran supports -c -o file.o... yes
> checking whether the gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking sys/dg_sys_info.h usability... no
> checking sys/dg_sys_info.h presence... no
> checking for sys/dg_sys_info.h... no
> checking whether Solaris gcc optimization fix is necessary... no
> checking atomic_ops.h usability... no
> checking atomic_ops.h presence... no
> checking for atomic_ops.h... no
> configure: Using internal version of libatomic_ops
> configure: creating ./config.status
> config.status: creating Makefile
> config.status: creating bdw-gc.pc
> config.status: executing depfiles commands
> config.status: executing default commands
> === configuring in libatomic_ops (/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/src/rapper/gc7.0/libatomic_ops)
> configure: running /bin/sh ./configure '--prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1' '--enable-shared=yes' '--exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1' '--bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin' '--libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib' '--disable-shared' 'CXX=x86_64-pc-linux-gnu-g++' 'CXXFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -fPIC' 'CC=x86_64-pc-linux-gnu-gcc' 'CFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC' 'F77=gfortran' 'FFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC' --cache-file=/dev/null --srcdir=.
> checking build system type... x86_64-unknown-linux-gnu
> checking host system type... x86_64-unknown-linux-gnu
> checking target system type... x86_64-unknown-linux-gnu
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking for ranlib... ranlib
> checking for gcc... x86_64-pc-linux-gnu-gcc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
> checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... none needed
> checking for style of include used by make... GNU
> checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
> checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
> checking for egrep... grep -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking for stdlib.h... (cached) yes
> checking for unistd.h... (cached) yes
> checking for getpagesize... yes
> checking for working mmap... yes
> checking for ANSI C header files... (cached) yes
> checking Determining PIC compiler flag... -fPIC
> configure: creating ./config.status
> config.status: creating Makefile
> config.status: creating src/Makefile
> config.status: creating src/atomic_ops/Makefile
> config.status: creating src/atomic_ops/sysdeps/Makefile
> config.status: creating doc/Makefile
> config.status: creating tests/Makefile
> config.status: creating src/config.h
> config.status: executing depfiles commands
> config.status: executing default commands
> === configuring in libxml2 (/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/src/rapper/libxml2)
> configure: running /bin/sh ./configure '--prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1' '--enable-shared=yes' '--exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1' '--bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin' '--libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib' '--disable-shared' 'CXX=x86_64-pc-linux-gnu-g++' 'CXXFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -fPIC' 'CC=x86_64-pc-linux-gnu-gcc' 'CFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC' 'F77=gfortran' 'FFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC' --cache-file=/dev/null --srcdir=.
> checking build system type... x86_64-unknown-linux-gnu
> checking host system type... x86_64-unknown-linux-gnu
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking for gcc... x86_64-pc-linux-gnu-gcc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
> checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... none needed
> checking for style of include used by make... GNU
> checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
> checking for a BSD-compatible install... /usr/bin/install -c
> checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
> checking for rm... /bin/rm
> checking for mv... /bin/mv
> checking for tar... /bin/tar
> checking for perl... /usr/bin/perl
> checking for xmllint... /usr/bin/xmllint
> checking for xsltproc... /usr/bin/xsltproc
> checking for function prototypes... yes
> checking for egrep... grep -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking for string.h... (cached) yes
> checking for a sed that does not truncate output... /bin/sed
> checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
> checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
> checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
> checking for BSD-compatible nm... /usr/bin/nm -B
> checking whether ln -s works... yes
> checking how to recognise dependent libraries... pass_all
> checking dlfcn.h usability... yes
> checking dlfcn.h presence... yes
> checking for dlfcn.h... yes
> checking whether we are using the GNU C++ compiler... yes
> checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
> checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
> checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
> checking whether we are using the GNU Fortran 77 compiler... yes
> checking whether gfortran accepts -g... yes
> checking the maximum length of command line arguments... 32768
> checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
> checking for objdir... .libs
> checking for ar... ar
> checking for ranlib... ranlib
> checking for strip... strip
> checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
> checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
> checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
> checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
> checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
> checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> configure: creating libtool
> appending configuration tag "CXX" to libtool
> checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
> checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
> checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
> checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
> checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
> checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
> checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> appending configuration tag "F77" to libtool
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> checking for gfortran option to produce PIC... -fPIC
> checking if gfortran PIC flag -fPIC works... yes
> checking if gfortran static flag -static works... yes
> checking if gfortran supports -c -o file.o... yes
> checking whether the gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> Checking zlib
> checking zlib.h usability... yes
> checking zlib.h presence... yes
> checking for zlib.h... yes
> checking for gzread in -lz... yes
> Checking headers
> checking for dirent.h that defines DIR... yes
> checking for library containing opendir... none required
> checking for ANSI C header files... (cached) yes
> checking fcntl.h usability... yes
> checking fcntl.h presence... yes
> checking for fcntl.h... yes
> checking for unistd.h... (cached) yes
> checking ctype.h usability... yes
> checking ctype.h presence... yes
> checking for ctype.h... yes
> checking dirent.h usability... yes
> checking dirent.h presence... yes
> checking for dirent.h... yes
> checking errno.h usability... yes
> checking errno.h presence... yes
> checking for errno.h... yes
> checking malloc.h usability... yes
> checking malloc.h presence... yes
> checking for malloc.h... yes
> checking stdarg.h usability... yes
> checking stdarg.h presence... yes
> checking for stdarg.h... yes
> checking for sys/stat.h... (cached) yes
> checking for sys/types.h... (cached) yes
> checking time.h usability... yes
> checking time.h presence... yes
> checking for time.h... yes
> checking ansidecl.h usability... yes
> checking ansidecl.h presence... yes
> checking for ansidecl.h... yes
> checking ieeefp.h usability... no
> checking ieeefp.h presence... no
> checking for ieeefp.h... no
> checking nan.h usability... no
> checking nan.h presence... no
> checking for nan.h... no
> checking math.h usability... yes
> checking math.h presence... yes
> checking for math.h... yes
> checking limits.h usability... yes
> checking limits.h presence... yes
> checking for limits.h... yes
> checking fp_class.h usability... no
> checking fp_class.h presence... no
> checking for fp_class.h... no
> checking float.h usability... yes
> checking float.h presence... yes
> checking for float.h... yes
> checking for stdlib.h... (cached) yes
> checking for sys/socket.h... yes
> checking for netinet/in.h... yes
> checking for arpa/inet.h... yes
> checking netdb.h usability... yes
> checking netdb.h presence... yes
> checking for netdb.h... yes
> checking sys/time.h usability... yes
> checking sys/time.h presence... yes
> checking for sys/time.h... yes
> checking sys/select.h usability... yes
> checking sys/select.h presence... yes
> checking for sys/select.h... yes
> checking sys/mman.h usability... yes
> checking sys/mman.h presence... yes
> checking for sys/mman.h... yes
> checking sys/timeb.h usability... yes
> checking sys/timeb.h presence... yes
> checking for sys/timeb.h... yes
> checking signal.h usability... yes
> checking signal.h presence... yes
> checking for signal.h... yes
> checking for arpa/nameser.h... yes
> checking for resolv.h... yes
> checking dl.h usability... no
> checking dl.h presence... no
> checking for dl.h... no
> checking for dlfcn.h... (cached) yes
> Checking libraries
> checking for strftime... yes
> checking for strdup... yes
> checking for strndup... yes
> checking for strerror... yes
> checking for finite... yes
> checking for isnand... no
> checking for fp_class... no
> checking for class... no
> checking for fpclass... no
> checking for strftime... (cached) yes
> checking for localtime... yes
> checking for gettimeofday... yes
> checking for ftime... yes
> checking for stat... yes
> checking for _stat... no
> checking for signal... yes
> checking for printf... yes
> checking for sprintf... yes
> checking for fprintf... yes
> checking for snprintf... yes
> checking for vfprintf... yes
> checking for vsprintf... yes
> checking for vsnprintf... yes
> checking for sscanf... yes
> checking for va_copy... yes
> checking for library containing gethostent... none required
> checking for library containing setsockopt... none required
> checking for library containing connect... none required
> checking for type of socket length (socklen_t)... socklen_t *
> checking whether to enable IPv6... yes
> checking struct sockaddr::ss_family... yes
> checking for getaddrinfo... yes
> checking for isnan... yes
> checking for isinf... yes
> checking for python... /usr/bin/python
> Found Python version 2.5
> checking for shl_load... no
> checking for shl_load in -ldld... no
> checking for dlopen... no
> checking for dlopen in -ldl... yes
> Checking configuration requirements
> Enabling multithreaded support
> checking pthread.h usability... yes
> checking pthread.h presence... yes
> checking for pthread.h... yes
> checking for pthread_join in -lpthread... yes
> checking iconv.h usability... yes
> checking iconv.h presence... yes
> checking for iconv.h... yes
> checking for iconv... yes
> Enabled Schematron support
> Enabled Schemas/Relax-NG support
> configure: creating ./config.status
> config.status: creating libxml2.spec
> config.status: creating Makefile
> config.status: creating include/Makefile
> config.status: creating include/libxml/Makefile
> config.status: creating doc/Makefile
> config.status: creating doc/examples/Makefile
> config.status: creating doc/devhelp/Makefile
> config.status: creating example/Makefile
> config.status: creating python/Makefile
> config.status: creating python/tests/Makefile
> config.status: creating xstc/Makefile
> config.status: creating include/libxml/xmlversion.h
> config.status: creating xml2-config
> config.status: creating libxml-2.0.pc
> config.status: creating libxml-2.0-uninstalled.pc
> config.status: creating python/setup.py
> config.status: creating config.h
> config.status: executing depfiles commands
> Done configuring
>
> ***** RAPPER CONFIGURATION FINISHED *******
>
>
> ********* PISA CONFIGURATION ***********
>
> Updating modification times for configuration files
> Please wait...
> ...done.
>
> configure --enable-shared=yes --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin --libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib --with-mmdb=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --with-ssm=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking whether to enable maintainer-specific portions of Makefiles... no
> checking for C++ compiler default output file name... a.out
> checking whether the C++ compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C++ compiler... yes
> checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
> checking for style of include used by make... GNU
> checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
> checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
> checking for egrep... grep -E
> checking for ANSI C header files... yes
> checking for a BSD-compatible install... /usr/bin/install -c
> checking for floor... yes
> checking for pow... yes
> checking for rint... yes
> checking for sqrt... yes
> checking for sqrt in -lm... yes
> checking for CMMDBManager in MMDB... no
> configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -lmmdb headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb
> checking for CSSMAlign in SSM... no
> configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -lssm headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm
> configure: creating ./config.status
> config.status: creating Makefile
> config.status: creating pisastore/Makefile
> config.status: creating molref/Makefile
> config.status: creating sbase/Makefile
> config.status: creating doc/Makefile
> config.status: creating pisa.cfg
> config.status: executing depfiles commands
>
> ***** PISA CONFIGURATION FINISHED *******
>
>
> Building of the RCSB PDB_EXTRACT suite has been suppressed.
> As a result you will not be able to use the PDB_EXTRACT programs.
>
> The configuration can be re-built by executing config.status :
>
> #!/bin/sh
> # (Generated automatically by configure)
> # CCP4 was configured as follows:
> libdir="/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib" RANLIB="ranlib" \
> FC="gfortran" FOPTIM="-O2 -march=core2 -pipe -fomit-frame-pointer" \
> COPTIM="-O2 -march=core2 -pipe -fomit-frame-pointer" XFFLAGS="-fno-second-underscore -fno-stack-protector -fPIC" \
> XCFLAGS="-DGFORTRAN -DPROTOTYPE -fPIC" CC="x86_64-pc-linux-gnu-gcc" \
> LNS="ln -s" M4="m4 -D_gfort=1" \
> XCXXFLAGS=" -fPIC" CXX="x86_64-pc-linux-gnu-g++" \
> CXXOPTIM="-O2 -march=core2 -pipe -fomit-frame-pointer" \
> M4FLAGS="" SETFLAGS="refmac5_FLAGS='-fno-second-underscore -fno-stack-protector -fPIC -O0' lgglib_FLAGS='-fno-second-underscore -fno-stack-protector -fPIC -O0' arp_waters_FLAGS='-fno-second-underscore -fno-stack-protector -fPIC -O2 -march=core2 -pipe -fomit-frame-pointer' " \
> MAKE="make" F="f" \
> INSTALL_PROGRAM="cp -p" INSTALL_DATA="cp -p" \
> XLDFLAGS="-Wl,-rpath,/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -lm" \
> SHARE_LIB="ld -shared -soname libmmdb.so --whole-archive -o libmmdb.so libmmdb.a; ld -shared -soname libccp4c.so --whole-archive -o libccp4c.so libccp4c.a; ld -shared -soname libccp4f.so --whole-archive -o libccp4f.so libccp4f.a" \
> SHARED_LIB_CFLAGS="" \
> SHARED_LIB_FFLAGS="" \
> SHARE_INST="$(INSTALL_DATA) `pwd`/libmmdb.so $(libdir)/libmmdb.so; $(INSTALL_DATA) `pwd`/libccp4c.so $(libdir)/libccp4c.so; $(INSTALL_DATA) `pwd`/libccp4f.so $(libdir)/libccp4f.so; " \
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/configure --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --srcdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin --libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib --onlylibs --with-shared-libs --tmpdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/temp --disable-x --disable-cctbx --disable-phaser --disable-mapslicer --enable-clipper --enable-ssm --disable-fftw --with-fftw=/usr --with-warnings --disable-pdb_extract linux64 -hush
>
> make -j12 -l8 -j1 onlylib
> if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lapack; \
> make -l 8 ; else true; fi
> if test -n "lib/ccif"; then cd lib/ccif; \
> make -l 8 ; else true; fi; \
> make install
> make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif'
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o condition.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/condition.c && \
> ar r libccif.a condition.o && true
> ar: creating libccif.a
> ranlib libccif.a
> rm -f condition.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o star_map.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/star_map.c &&\
> ar r libccif.a star_map.o && true
> ranlib libccif.a
> rm -f star_map.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o ccif_unix.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/ccif_unix.c && \
> ar r libccif.a ccif_unix.o && true
> ranlib libccif.a
> rm -f ccif_unix.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o sym.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c && \
> ar r libccif.a sym.o && true
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c: In function ‘zzs_stat’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:488: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:510: warning: format ‘%d’ expects type ‘int’, but argument 4 has type ‘size_t’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:510: warning: format ‘%d’ expects type ‘int’, but argument 5 has type ‘size_t’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c: In function ‘zzs_dump’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:722: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:722: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:723: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:723: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:730: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:731: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:732: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:733: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:734: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:735: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:762: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c: In function ‘zzs_undump’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:852: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:852: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:853: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:853: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:860: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:861: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:862: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:863: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:864: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:894: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:901: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
> ranlib libccif.a
> rm -f sym.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o sorlist.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sorlist.c && \
> ar r libccif.a sorlist.o && true
> ranlib libccif.a
> rm -f sorlist.o
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/scanf_ansi.c -o scanf_ansi
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o star_scan.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/star_scan.c -DPTR_FROM_TEXT=`/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/scanf_test` && \
> ar r libccif.a star_scan.o && true
> ranlib libccif.a
> rm -f star_scan.o scanf_ansi
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o star_err.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/star_err.c && \
> ar r libccif.a star_err.o && true
> ranlib libccif.a
> rm -f star_err.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o value_manip.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/value_manip.c && \
> ar r libccif.a value_manip.o && true
> ranlib libccif.a
> rm -f value_manip.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o context.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/context.c && \
> ar r libccif.a context.o && true
> ranlib libccif.a
> rm -f context.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o struct_manip.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/struct_manip.c && \
> ar r libccif.a struct_manip.o && true
> ranlib libccif.a
> rm -f struct_manip.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o f_interface.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/f_interface.c && \
> ar r libccif.a f_interface.o && true
> ranlib libccif.a
> rm -f f_interface.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o star_walk.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/star_walk.c && \
> ar r libccif.a star_walk.o && true
> ranlib libccif.a
> rm -f star_walk.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o star_print.o -D_refvar_inits=star_print_refvar_inits /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/star_print.c && \
> ar r libccif.a star_print.o && true
> ranlib libccif.a
> rm -f star_print.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o star_graph.o -D_refvar_inits=star_dot_refvar_inits /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/star_graph.c && \
> ar r libccif.a star_graph.o && true
> ranlib libccif.a
> rm -f star_graph.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o lib_dict2tab.o -D_refvar_inits=_dict_refvar_inits \
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/lib_dict2tab.c && \
> ar r libccif.a lib_dict2tab.o && true
> ranlib libccif.a
> rm -f lib_dict2tab.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o sort.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sort.c && \
> ar r libccif.a sort.o && true
> ranlib libccif.a
> rm -f sort.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o list.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/list.c && \
> ar r libccif.a list.o && true
> ranlib libccif.a
> rm -f list.o
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o rb.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c && \
> ar r libccif.a rb.o && true
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c: In function ‘rb_print_tree’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:446: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:448: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:448: warning: format ‘%x’ expects type ‘unsigned int’, but argument 3 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:454: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:454: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:462: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:462: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:462: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:462: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c: In function ‘rb_iprint_tree’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:471: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:474: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:474: warning: format ‘%x’ expects type ‘unsigned int’, but argument 3 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:474: warning: format ‘%x’ expects type ‘unsigned int’, but argument 4 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:474: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:481: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:481: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:481: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:481: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:489: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:489: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:489: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:489: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’
> ranlib libccif.a
> rm -f rb.o
> if ( test ! -f /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/strtod.c ); then touch /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/strtod.c; fi
> if (test -s /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/strtod.c -a -r /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/strtod.c) ; \
> then \
> x86_64-pc-linux-gnu-gcc -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/strtod.c && ar r libccif.a strtod.o; \
> ranlib libccif.a ; rm -f strtod.o; \
> else \
> touch libccif.a ; \
> fi
> if test -f /librx.a; then \
> rm -rf rx.dir; mkdir rx.dir; \
> echo 'rxdispencer routines being added to library'; \
> cp /librx.a rx.dir; cd rx.dir; \
> ar -x librx.a; cd ..; \
> ar r libccif.a rx.dir/*.o; \
> ranlib libccif.a; rm -rf rx.dir; \
> fi
> ld -fPIC -shared -soname libccif.so --whole-archive libccif.a -o libccif.so
> x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/cifdic_to_symtab.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -o cifdic_to_symtab cifdic_to_symtab.o -Wl,-rpath,/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -lm -L`pwd` -lccif -lm
>
> Building symbol table:
> LD_LIBRARY_PATH=`pwd`:/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib ./cifdic_to_symtab /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data/cif_mm.dic cif_mmdic.lib 199 > cif_mmdic.out
> Loading dictionary....dictionary loaded.
> Starting first tree walk....tree walk completed.
> Starting second tree walk....tree walk completed.
> Grouping items in their categories....done
> Dumping symbol table....symbol table dumped.
> make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif'
> make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif'
> if test -f /librx.a; then \
> rm -rf rx.dir; mkdir rx.dir; \
> echo 'rxdispencer routines being added to library'; \
> cp /librx.a rx.dir; cd rx.dir; \
> ar -x librx.a; cd ..; \
> ar r libccif.a rx.dir/*.o; \
> ranlib libccif.a; rm -rf rx.dir; \
> fi
> ld -fPIC -shared -soname libccif.so --whole-archive libccif.a -o libccif.so
> cp -p `pwd`/libccif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccif.a
> cp -p `pwd`/cif_mmdic.lib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/cif_mmdic.lib
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccif.a
> if (test -f libccif.so); then \
> cp -p `pwd`/libccif.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccif.so; \
> fi
> make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif'
> cd lib/src; make -l 8 ; \
> make install
> make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src'
> test ! -x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit && x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit fsplit.c || true
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename bfgs_min.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_chain.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_manager.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_symop.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename file_.o .o`.cpp
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/file_.cpp: In member function ‘word CFile::ReadLine(char*, word)’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/file_.cpp:681: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_cifdefs.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_mask.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_title.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename linalg_.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_coormngr.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_mmcif.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_utils.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename machine_.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_cryst.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_model.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename stream_.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mattype_.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_file.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_rwbrook.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_atom.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_graph.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_selmngr.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_align.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename hybrid_36.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_tables.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename math_.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_sbase.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_sbase0.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_uddata.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_xml.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_bondmngr.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_ficif.o .o`.cpp
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename random_n.o .o`.cpp
> ar r ./libmmdb.a bfgs_min.o mmdb_chain.o mmdb_manager.o mmdb_symop.o file_.o mmdb_cifdefs.o mmdb_mask.o mmdb_title.o linalg_.o mmdb_coormngr.o mmdb_mmcif.o mmdb_utils.o machine_.o mmdb_cryst.o mmdb_model.o stream_.o mattype_.o mmdb_file.o mmdb_rwbrook.o mmdb_atom.o mmdb_graph.o mmdb_selmngr.o mmdb_align.o hybrid_36.o mmdb_tables.o math_.o mmdb_sbase.o mmdb_sbase0.o mmdb_uddata.o mmdb_xml.o mmdb_bondmngr.o mmdb_ficif.o random_n.o
> ar: creating ./libmmdb.a
> ranlib libmmdb.a
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename library_err.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename library_file.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename library_utils.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_array.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_parser.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cvecmat.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_program.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_general.o .o`.c
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_general.c: In function ‘ccperror’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_general.c:98: warning: passing argument 2 of ‘ccp4InvokeCallback’ discards qualifiers from pointer target type
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_unitcell.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmtzlib.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_accessor.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_close.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_data.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_header.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_labels.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_open.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_skew.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_stats.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_symop.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename csymlib.o .o`.c
> ar r ./libccp4c.a library_err.o library_file.o library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o
> ar: creating ./libccp4c.a
> ranlib libccp4c.a
> rm -rf parser.dir; mkdir parser.dir
> cd parser.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/parser.f && rm -f ZZZ*.f zzz*.f;
> keynum.f
> keyerr.f
> gtnrea.f
> gtnint.f
> gtprea.f
> gtpint.f
> sblank.f
> cmatch.f
> chkkey.f
> putlin.f
> blank.f
> lerror.f
> rdsymm.f
> rdhead.f
> rdcell.f
> rdreso.f
> rdscal.f
> rdresl.f
> gttrea.f
> gttint.f
> rdatomselect.f
> if test ! -f parser.dir/parser.f; then \
> echo ' SUBROUTINE PRSER' > parser.dir/parser.f; \
> echo ' END' >> parser.dir/parser.f; \
> fi
> cd parser.dir && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
> && ar r .././libccp4f.a *.o
> ar: creating .././libccp4f.a
> rm -f parser.dir/*.o
> rm -rf fftlib.dir; mkdir fftlib.dir
> echo ' SUBROUTINE FFTLIB' > fftlib.dir/fftlib.f
> echo ' END' >> fftlib.dir/fftlib.f
> cd fftlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fftlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done \
> && ar r .././libccp4f.a *.o
> rm -f fftlib.dir/*.o
> rm -rf lgglib.dir; mkdir lgglib.dir
> echo ' SUBROUTINE LGGLIB' > lgglib.dir/lgglib.f
> echo ' END' >> lgglib.dir/lgglib.f
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/getpdb1.f:29.72:
>
> 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm)
> 1
> Warning: Branch at (1) causes an infinite loop
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/getpdb2.f:31.72:
>
> 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm)
> 1
> Warning: Branch at (1) causes an infinite loop
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/getpdb3.f:31.72:
>
> 1 res(natm), (X(I,NATM),I=1,3),occ(natm),bfac(natm)
> 1
> Warning: Branch at (1) causes an infinite loop
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/getpdbca.f:24.72:
>
> 1 , (X(I,NATM),I=1,3)
> 1
> Warning: Branch at (1) causes an infinite loop
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/getpdb.f:23.72:
>
> 1 , (X(I,NATM),I=1,3)
> 1
> Warning: Branch at (1) causes an infinite loop
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/getrdi.f:25.72:
>
> 1 SEQ(NATM), RES(NATM), ATOM(NATM)
> 1
> Warning: Branch at (1) causes an infinite loop
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/packexpnd.f:48.72:
>
> if (jmove.eq.14) goto 40
> 1
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/packexpnd.f:69.72:
>
> 40 end do
> 2
> Warning: Deleted feature: GOTO at (1) jumps to END of construct at (2)
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/packexpnd.f:66.72:
>
> goto 40
> 1
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/packexpnd.f:69.72:
>
> 40 end do
> 2
> Warning: Deleted feature: GOTO at (1) jumps to END of construct at (2)
> rm -f lgglib.dir/*.o
> rm -rf libhtml.dir; mkdir libhtml.dir
> echo ' SUBROUTINE LIBHTML' > libhtml.dir/libhtml.f
> echo ' END' >> libhtml.dir/libhtml.f
> cd libhtml.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/libhtml.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
> && ar r .././libccp4f.a *.o
> rm -f libhtml.dir/*.o
> rm -rf modlib.dir; mkdir modlib.dir
> echo ' SUBROUTINE MODLIB' > modlib.dir/modlib.f
> echo ' END' >> modlib.dir/modlib.f
> cd modlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/modlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
> && ar r .././libccp4f.a *.o
> rm -f modlib.dir/*.o
> rm -rf plotsubs.dir; mkdir plotsubs.dir
> echo ' SUBROUTINE PLOTSUBS' > plotsubs.dir/plotsubs.f
> echo ' END' >> plotsubs.dir/plotsubs.f
> cd plotsubs.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/plotsubs.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
> && ar r .././libccp4f.a *.o
> rm -f plotsubs.dir/*.o
> rm -rf plot84lib.dir; mkdir plot84lib.dir
> echo ' SUBROUTINE PLOT84LIB' > plot84lib.dir/plot84lib.f
> echo ' END' >> plot84lib.dir/plot84lib.f
> cd plot84lib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/plot84lib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
> && ar r .././libccp4f.a *.o
> rm -f plot84lib.dir/*.o
> rm -rf pxxml.dir; mkdir pxxml.dir
> echo ' SUBROUTINE PXXML' > pxxml.dir/pxxml.f
> echo ' END' >> pxxml.dir/pxxml.f
> cd pxxml.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pxxml.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
> && ar r .././libccp4f.a *.o
> rm -f pxxml.dir/*.o
> rm -rf ccplib.dir; mkdir ccplib.dir
> echo ' SUBROUTINE CCPLIB' > ccplib.dir/ccplib.f
> echo ' END' >> ccplib.dir/ccplib.f
> cd ccplib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccplib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
> && ar r .././libccp4f.a *.o
> rm -f ccplib.dir/*.o
> m4 -D_gfort=1 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/unix.m4 >unix.f
> rm -rf unix.dir; mkdir unix.dir
> echo ' SUBROUTINE UNIX' > unix.dir/unix.f
> echo ' END' >> unix.dir/unix.f
> cd unix.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit ../unix.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
> && ar r .././libccp4f.a *.o
> rm -f unix.dir/*.o
> rm -rf rwbrook.dir; mkdir rwbrook.dir
> echo ' SUBROUTINE RWBROOK' > rwbrook.dir/rwbrook.f
> echo ' END' >> rwbrook.dir/rwbrook.f
> cd rwbrook.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/rwbrook.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
> && ar r .././libccp4f.a *.o
> rm -f rwbrook.dir/*.o
> rm -rf cciflib.dir; mkdir cciflib.dir
> echo ' SUBROUTINE CCIFLIB' > cciflib.dir/cciflib.f
> echo ' END' >> cciflib.dir/cciflib.f
> cd cciflib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cciflib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src $i; done\
> && ar r .././libccp4f.a *.o
> rm -f cciflib.dir/*.o
> rm -rf harvlib.dir; mkdir harvlib.dir
> echo ' SUBROUTINE HARVLIB' > harvlib.dir/harvlib.f
> echo ' END' >> harvlib.dir/harvlib.f
> if test -n "lib/ccif" ; then cd harvlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/harvlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src $i; done\
> && ar r .././libccp4f.a *.o ; else \
> cd harvlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/harv_dummy.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src $i; done\
> && ar r .././libccp4f.a *.o ; fi
> rm -f harvlib.dir/*.o
> rm -rf keyparse.dir; mkdir keyparse.dir
> echo ' SUBROUTINE KEYPARSE' > keyparse.dir/keyparse.f
> echo ' END' >> keyparse.dir/keyparse.f
> cd keyparse.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/keyparse.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
> && ar r .././libccp4f.a *.o
> rm -f keyparse.dir/*.o
> gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_f.f && ar r ./libccp4f.a pack_f.o \
> && rm pack_f.o
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c: In function ‘pack_chunk’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c:852: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c:860: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c: In function ‘v2pack_chunk’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c:901: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c:910: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
> ar r ./libccp4f.a pack_c.o && rm pack_c.o
> rm -rf dna_output.dir; mkdir dna_output.dir
> echo ' SUBROUTINE DNA_OUTPUT' > dna_output.dir/dna_output.f
> echo ' END' >> dna_output.dir/dna_output.f
> cd dna_output.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/dna_output.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
> for i in `pwd`/*.f; do \
> gfortran -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
> && ar r .././libccp4f.a *.o
> rm -f dna_output.dir/*.o
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmtzlib_f.o .o`.c
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lrhist_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:275: warning: passing argument 2 of ‘ccp4_lrhist’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lkyin_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:602: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lkyout_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:656: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lkyset_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:701: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:701: warning: passing argument 4 of ‘MtzParseLabin’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lrassn_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:800: warning: passing argument 2 of ‘ccp4_lrassn’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:800: warning: passing argument 4 of ‘ccp4_lrassn’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lrreff_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:1180: warning: passing argument 5 of ‘ccp4_lrreff’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lwhist_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:1777: warning: passing argument 2 of ‘MtzAddHistory’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lwhstl_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:1829: warning: passing argument 2 of ‘MtzAddHistory’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lwassn_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:2381: warning: passing argument 2 of ‘ccp4_lwassn’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:2381: warning: passing argument 4 of ‘ccp4_lwassn’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lwclab_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:2459: warning: passing argument 2 of ‘ccp4_lwassn’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:2459: warning: passing argument 4 of ‘ccp4_lwassn’ from incompatible pointer type
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename csymlib_f.o .o`.c
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/csymlib_f.c: In function ‘symtr3_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/csymlib_f.c:341: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/csymlib_f.c: In function ‘symtr4_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/csymlib_f.c:377: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/csymlib_f.c: In function ‘calc_orig_ps_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/csymlib_f.c:1684: warning: passing argument 3 of ‘ccp4spg_generate_origins’ from incompatible pointer type
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_parser_f.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename library_f.o .o`.c
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/library_f.c: In function ‘ltime_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/library_f.c:799: warning: passing argument 1 of ‘localtime_r’ makes pointer from integer without a cast
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/library_f.c: In function ‘gmtime_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/library_f.c:832: warning: passing argument 1 of ‘gmtime_r’ makes pointer from integer without a cast
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_diskio_f.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_general_f.o .o`.c
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_unitcell_f.o .o`.c
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_orth_to_frac_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c:86: warning: passing argument 1 of ‘ccp4uc_orth_to_frac’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_frac_to_orth_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c:105: warning: passing argument 1 of ‘ccp4uc_orth_to_frac’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_orthu_to_fracu_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c:124: warning: passing argument 1 of ‘ccp4uc_orthu_to_fracu’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_fracu_to_orthu_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c:143: warning: passing argument 1 of ‘ccp4uc_orthu_to_fracu’ from incompatible pointer type
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmaplib_f.o .o`.c
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c: In function ‘ioArrayPrint’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c:91: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c:97: warning: passing argument 1 of ‘free’ discards qualifiers from pointer target type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c: In function ‘msywrt_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c:1154: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c: In function ‘ccp4_map_write_symm_matrix_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c:1181: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename binsortint.o .o`.c
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/binsortint.c: In function ‘srtbeg_’:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/binsortint.c:160: warning: ignoring return value of ‘pipe’, declared with attribute warn_unused_result
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/binsortint.c:161: warning: ignoring return value of ‘pipe’, declared with attribute warn_unused_result
> x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename hybrid_36_f.o .o`.c
> ar r ./libccp4f.a cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o
> ranlib libccp4f.a
> ld -shared -soname libmmdb.so --whole-archive -o libmmdb.so libmmdb.a; ld -shared -soname libccp4c.so --whole-archive -o libccp4c.so libccp4c.a; ld -shared -soname libccp4f.so --whole-archive -o libccp4f.so libccp4f.a
> make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src'
> make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src'
> ld -shared -soname libmmdb.so --whole-archive -o libmmdb.so libmmdb.a; ld -shared -soname libccp4c.so --whole-archive -o libccp4c.so libccp4c.a; ld -shared -soname libccp4f.so --whole-archive -o libccp4f.so libccp4f.a
> if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4; then mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4; fi
> cp -p ccp4_file_err.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_file_err.h
> cp -p ccp4_program.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_program.h
> cp -p ccp4_unitcell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_unitcell.h
> cp -p cmap_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_errno.h
> cp -p cmap_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_stats.h
> cp -p csymlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/csymlib.h
> cp -p library_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/library_file.h
> cp -p w32mvs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/w32mvs.h
> cp -p ccp4_fortran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_fortran.h
> cp -p ccp4_spg.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_spg.h
> cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_utils.h
> cp -p cmap_header.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_header.h
> cp -p cmaplib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmaplib.h
> cp -p cvecmat.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cvecmat.h
> cp -p mtzdata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/mtzdata.h
> cp -p ccp4_array.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_array.h
> cp -p ccp4_general.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_general.h
> cp -p ccp4_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_sysdep.h
> cp -p ccp4_vars.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_vars.h
> cp -p cmap_labels.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_labels.h
> cp -p cmaplib_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmaplib_f.h
> cp -p overview.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/overview.h
> cp -p ccp4_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_errno.h
> cp -p ccp4_parser.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_parser.h
> cp -p ccp4_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_types.h
> cp -p cmap_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_data.h
> cp -p cmap_skew.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_skew.h
> cp -p cmtzlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmtzlib.h
> cp -p library_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/library_f.h
> if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb; then mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb; fi
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/bfgs_min.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/bfgs_min.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/math_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/math_.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_bondmngr.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_bondmngr.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_cryst.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_cryst.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_graph.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_graph.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_model.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_model.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_symop.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_symop.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_utils.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/file_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/file_.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mattype_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mattype_.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_chain.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_chain.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_defs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_defs.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_manager.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_manager.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_rwbrook.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_rwbrook.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_tables.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_tables.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_xml.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_xml.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/linalg_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/linalg_.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_align.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_align.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_cifdefs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_cifdefs.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_ficif.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_ficif.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_mask.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_mask.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_sbase.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_sbase.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_title.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_title.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/random_n.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/random_n.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/machine_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/machine_.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_atom.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_atom.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_coormngr.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_coormngr.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_file.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_mmcif.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_mmcif.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_selmngr.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_selmngr.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_uddata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_uddata.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/stream_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/stream_.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_sbase0.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_sbase0.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/hybrid_36.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/hybrid_36.h
> cp -p `pwd`/./libmmdb.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libmmdb.a
> cp -p `pwd`/./libccp4c.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4c.a
> cp -p `pwd`/./libccp4f.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4f.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libmmdb.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4c.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4f.a
> cp -p `pwd`/libmmdb.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libmmdb.so; cp -p `pwd`/libccp4c.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccp4c.so; cp -p `pwd`/libccp4f.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccp4f.so;
> make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src'
> if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/fftw; \
> make -i -l 8 install; else true; fi ; \
> make install
> make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1'
> for i in lib/clipper lib/DiffractionImage lib/ccif lib/src lib/ssm src lib/data unsupported/src x-windows share ; do (if test -f $i/Makefile; then \
> if test $i = x-windows; then \
> cd $i; make -i -wl 8 install; \
> else cd $i; make -wl 8 install; fi; \
> else true; fi) ; done
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper'
> Making install in macros
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/macros'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/macros'
> make[4]: Nothing to be done for `install-exec-am'.
> make[4]: Nothing to be done for `install-data-am'.
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/macros'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/macros'
> Making install in clipper
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> Making install in phs
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
> source='phs_io.cpp' object='phs_io.lo' libtool=yes \
> depfile='.deps/phs_io.Plo' tmpdepfile='.deps/phs_io.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o phs_io.lo `test -f 'phs_io.cpp' || echo './'`phs_io.cpp
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c phs_io.cpp -MT phs_io.lo -MD -MP -MF .deps/phs_io.TPlo -fPIC -DPIC -o .libs/phs_io.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c phs_io.cpp -MT phs_io.lo -MD -MP -MF .deps/phs_io.TPlo -o phs_io.o >/dev/null 2>&1
> /bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-phs.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 phs_io.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/phs_io.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-phs.so.2 -o .libs/libclipper-phs.so.2.0.0
> (cd .libs && rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.0 libclipper-phs.so.2)
> (cd .libs && rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.0 libclipper-phs.so)
> ar cru .libs/libclipper-phs.a phs_io.o
> ranlib .libs/libclipper-phs.a
> creating libclipper-phs.la
> (cd .libs && rm -f libclipper-phs.la && ln -s ../libclipper-phs.la libclipper-phs.la)
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-phs.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.la
> /usr/bin/install -c .libs/libclipper-phs.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-phs.so.2.0.0 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.0 libclipper-phs.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-phs.so.2.0.0 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.0 libclipper-phs.so; }; })
> /usr/bin/install -c .libs/libclipper-phs.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.la
> /usr/bin/install -c .libs/libclipper-phs.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/phs
> mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper
> mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/phs
> cp -p phs_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/phs/phs_io.h
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
> Making install in contrib
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
> source='convolution_search.cpp' object='convolution_search.lo' libtool=yes \
> depfile='.deps/convolution_search.Plo' tmpdepfile='.deps/convolution_search.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o convolution_search.lo `test -f 'convolution_search.cpp' || echo './'`convolution_search.cpp
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c convolution_search.cpp -MT convolution_search.lo -MD -MP -MF .deps/convolution_search.TPlo -fPIC -DPIC -o .libs/convolution_search.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c convolution_search.cpp -MT convolution_search.lo -MD -MP -MF .deps/convolution_search.TPlo -o convolution_search.o >/dev/null 2>&1
> source='sfcalc.cpp' object='sfcalc.lo' libtool=yes \
> depfile='.deps/sfcalc.Plo' tmpdepfile='.deps/sfcalc.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o sfcalc.lo `test -f 'sfcalc.cpp' || echo './'`sfcalc.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfcalc.cpp -MT sfcalc.lo -MD -MP -MF .deps/sfcalc.TPlo -fPIC -DPIC -o .libs/sfcalc.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfcalc.cpp -MT sfcalc.lo -MD -MP -MF .deps/sfcalc.TPlo -o sfcalc.o >/dev/null 2>&1
> source='edcalc.cpp' object='edcalc.lo' libtool=yes \
> depfile='.deps/edcalc.Plo' tmpdepfile='.deps/edcalc.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o edcalc.lo `test -f 'edcalc.cpp' || echo './'`edcalc.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c edcalc.cpp -MT edcalc.lo -MD -MP -MF .deps/edcalc.TPlo -fPIC -DPIC -o .libs/edcalc.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c edcalc.cpp -MT edcalc.lo -MD -MP -MF .deps/edcalc.TPlo -o edcalc.o >/dev/null 2>&1
> source='sfcalc_obs.cpp' object='sfcalc_obs.lo' libtool=yes \
> depfile='.deps/sfcalc_obs.Plo' tmpdepfile='.deps/sfcalc_obs.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o sfcalc_obs.lo `test -f 'sfcalc_obs.cpp' || echo './'`sfcalc_obs.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfcalc_obs.cpp -MT sfcalc_obs.lo -MD -MP -MF .deps/sfcalc_obs.TPlo -fPIC -DPIC -o .libs/sfcalc_obs.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfcalc_obs.cpp -MT sfcalc_obs.lo -MD -MP -MF .deps/sfcalc_obs.TPlo -o sfcalc_obs.o >/dev/null 2>&1
> source='fffear.cpp' object='fffear.lo' libtool=yes \
> depfile='.deps/fffear.Plo' tmpdepfile='.deps/fffear.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o fffear.lo `test -f 'fffear.cpp' || echo './'`fffear.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c fffear.cpp -MT fffear.lo -MD -MP -MF .deps/fffear.TPlo -fPIC -DPIC -o .libs/fffear.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c fffear.cpp -MT fffear.lo -MD -MP -MF .deps/fffear.TPlo -o fffear.o >/dev/null 2>&1
> source='sfscale.cpp' object='sfscale.lo' libtool=yes \
> depfile='.deps/sfscale.Plo' tmpdepfile='.deps/sfscale.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o sfscale.lo `test -f 'sfscale.cpp' || echo './'`sfscale.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfscale.cpp -MT sfscale.lo -MD -MP -MF .deps/sfscale.TPlo -fPIC -DPIC -o .libs/sfscale.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfscale.cpp -MT sfscale.lo -MD -MP -MF .deps/sfscale.TPlo -o sfscale.o >/dev/null 2>&1
> source='function_object_bases.cpp' object='function_object_bases.lo' libtool=yes \
> depfile='.deps/function_object_bases.Plo' tmpdepfile='.deps/function_object_bases.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o function_object_bases.lo `test -f 'function_object_bases.cpp' || echo './'`function_object_bases.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c function_object_bases.cpp -MT function_object_bases.lo -MD -MP -MF .deps/function_object_bases.TPlo -fPIC -DPIC -o .libs/function_object_bases.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c function_object_bases.cpp -MT function_object_bases.lo -MD -MP -MF .deps/function_object_bases.TPlo -o function_object_bases.o >/dev/null 2>&1
> source='sfweight.cpp' object='sfweight.lo' libtool=yes \
> depfile='.deps/sfweight.Plo' tmpdepfile='.deps/sfweight.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o sfweight.lo `test -f 'sfweight.cpp' || echo './'`sfweight.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfweight.cpp -MT sfweight.lo -MD -MP -MF .deps/sfweight.TPlo -fPIC -DPIC -o .libs/sfweight.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfweight.cpp -MT sfweight.lo -MD -MP -MF .deps/sfweight.TPlo -o sfweight.o >/dev/null 2>&1
> source='mapfilter.cpp' object='mapfilter.lo' libtool=yes \
> depfile='.deps/mapfilter.Plo' tmpdepfile='.deps/mapfilter.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o mapfilter.lo `test -f 'mapfilter.cpp' || echo './'`mapfilter.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c mapfilter.cpp -MT mapfilter.lo -MD -MP -MF .deps/mapfilter.TPlo -fPIC -DPIC -o .libs/mapfilter.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c mapfilter.cpp -MT mapfilter.lo -MD -MP -MF .deps/mapfilter.TPlo -o mapfilter.o >/dev/null 2>&1
> source='skeleton.cpp' object='skeleton.lo' libtool=yes \
> depfile='.deps/skeleton.Plo' tmpdepfile='.deps/skeleton.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o skeleton.lo `test -f 'skeleton.cpp' || echo './'`skeleton.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c skeleton.cpp -MT skeleton.lo -MD -MP -MF .deps/skeleton.TPlo -fPIC -DPIC -o .libs/skeleton.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c skeleton.cpp -MT skeleton.lo -MD -MP -MF .deps/skeleton.TPlo -o skeleton.o >/dev/null 2>&1
> source='originmatch.cpp' object='originmatch.lo' libtool=yes \
> depfile='.deps/originmatch.Plo' tmpdepfile='.deps/originmatch.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o originmatch.lo `test -f 'originmatch.cpp' || echo './'`originmatch.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c originmatch.cpp -MT originmatch.lo -MD -MP -MF .deps/originmatch.TPlo -fPIC -DPIC -o .libs/originmatch.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c originmatch.cpp -MT originmatch.lo -MD -MP -MF .deps/originmatch.TPlo -o originmatch.o >/dev/null 2>&1
> source='test_contrib.cpp' object='test_contrib.lo' libtool=yes \
> depfile='.deps/test_contrib.Plo' tmpdepfile='.deps/test_contrib.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o test_contrib.lo `test -f 'test_contrib.cpp' || echo './'`test_contrib.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c test_contrib.cpp -MT test_contrib.lo -MD -MP -MF .deps/test_contrib.TPlo -fPIC -DPIC -o .libs/test_contrib.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c test_contrib.cpp -MT test_contrib.lo -MD -MP -MF .deps/test_contrib.TPlo -o test_contrib.o >/dev/null 2>&1
> /bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-contrib.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.0
> (cd .libs && rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.0 libclipper-contrib.so.2)
> (cd .libs && rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.0 libclipper-contrib.so)
> ar cru .libs/libclipper-contrib.a convolution_search.o sfcalc.o edcalc.o sfcalc_obs.o fffear.o sfscale.o function_object_bases.o sfweight.o mapfilter.o skeleton.o originmatch.o test_contrib.o
> ranlib .libs/libclipper-contrib.a
> creating libclipper-contrib.la
> (cd .libs && rm -f libclipper-contrib.la && ln -s ../libclipper-contrib.la libclipper-contrib.la)
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.la
> /usr/bin/install -c .libs/libclipper-contrib.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-contrib.so.2.0.0 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.0 libclipper-contrib.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-contrib.so.2.0.0 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.0 libclipper-contrib.so; }; })
> /usr/bin/install -c .libs/libclipper-contrib.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.la
> /usr/bin/install -c .libs/libclipper-contrib.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib
> mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib
> cp -p convolution_search.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/convolution_search.h
> cp -p mapfilter.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/mapfilter.h
> cp -p sfscale.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfscale.h
> cp -p edcalc.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/edcalc.h
> cp -p originmatch.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/originmatch.h
> cp -p sfweight.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfweight.h
> cp -p fffear.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/fffear.h
> cp -p sfcalc.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfcalc.h
> cp -p skeleton.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/skeleton.h
> cp -p function_object_bases.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/function_object_bases.h
> cp -p sfcalc_obs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfcalc_obs.h
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
> Making install in cif
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
> source='cif_data_io.cpp' object='cif_data_io.lo' libtool=yes \
> depfile='.deps/cif_data_io.Plo' tmpdepfile='.deps/cif_data_io.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o cif_data_io.lo `test -f 'cif_data_io.cpp' || echo './'`cif_data_io.cpp
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cif_data_io.cpp -MT cif_data_io.lo -MD -MP -MF .deps/cif_data_io.TPlo -fPIC -DPIC -o .libs/cif_data_io.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cif_data_io.cpp -MT cif_data_io.lo -MD -MP -MF .deps/cif_data_io.TPlo -o cif_data_io.o >/dev/null 2>&1
> /bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-cif.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 cif_data_io.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/cif_data_io.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-cif.so.2 -o .libs/libclipper-cif.so.2.0.0
> (cd .libs && rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.0 libclipper-cif.so.2)
> (cd .libs && rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.0 libclipper-cif.so)
> ar cru .libs/libclipper-cif.a cif_data_io.o
> ranlib .libs/libclipper-cif.a
> creating libclipper-cif.la
> (cd .libs && rm -f libclipper-cif.la && ln -s ../libclipper-cif.la libclipper-cif.la)
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-cif.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.la
> /usr/bin/install -c .libs/libclipper-cif.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cif.so.2.0.0 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.0 libclipper-cif.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cif.so.2.0.0 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.0 libclipper-cif.so; }; })
> /usr/bin/install -c .libs/libclipper-cif.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.la
> /usr/bin/install -c .libs/libclipper-cif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cif
> mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cif
> cp -p cif_data_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cif/cif_data_io.h
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
> Making install in mmdb
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
> source='clipper_mmdb.cpp' object='clipper_mmdb.lo' libtool=yes \
> depfile='.deps/clipper_mmdb.Plo' tmpdepfile='.deps/clipper_mmdb.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_mmdb.lo `test -f 'clipper_mmdb.cpp' || echo './'`clipper_mmdb.cpp
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb.cpp -MT clipper_mmdb.lo -MD -MP -MF .deps/clipper_mmdb.TPlo -fPIC -DPIC -o .libs/clipper_mmdb.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb.cpp -MT clipper_mmdb.lo -MD -MP -MF .deps/clipper_mmdb.TPlo -o clipper_mmdb.o >/dev/null 2>&1
> /bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-mmdb.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 clipper_mmdb.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/clipper_mmdb.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-mmdb.so.2 -o .libs/libclipper-mmdb.so.2.0.0
> (cd .libs && rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.0 libclipper-mmdb.so.2)
> (cd .libs && rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.0 libclipper-mmdb.so)
> ar cru .libs/libclipper-mmdb.a clipper_mmdb.o
> ranlib .libs/libclipper-mmdb.a
> creating libclipper-mmdb.la
> (cd .libs && rm -f libclipper-mmdb.la && ln -s ../libclipper-mmdb.la libclipper-mmdb.la)
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-mmdb.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.la
> /usr/bin/install -c .libs/libclipper-mmdb.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdb.so.2.0.0 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.0 libclipper-mmdb.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdb.so.2.0.0 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.0 libclipper-mmdb.so; }; })
> /usr/bin/install -c .libs/libclipper-mmdb.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.la
> /usr/bin/install -c .libs/libclipper-mmdb.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdb
> mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdb
> cp -p clipper_mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdb/clipper_mmdb.h
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
> Making install in mmdbold
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
> source='clipper_mmdb.cpp' object='clipper_mmdb.lo' libtool=yes \
> depfile='.deps/clipper_mmdb.Plo' tmpdepfile='.deps/clipper_mmdb.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_mmdb.lo `test -f 'clipper_mmdb.cpp' || echo './'`clipper_mmdb.cpp
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb.cpp -MT clipper_mmdb.lo -MD -MP -MF .deps/clipper_mmdb.TPlo -fPIC -DPIC -o .libs/clipper_mmdb.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb.cpp -MT clipper_mmdb.lo -MD -MP -MF .deps/clipper_mmdb.TPlo -o clipper_mmdb.o >/dev/null 2>&1
> source='clipper_mmdb_wrapper.cpp' object='clipper_mmdb_wrapper.lo' libtool=yes \
> depfile='.deps/clipper_mmdb_wrapper.Plo' tmpdepfile='.deps/clipper_mmdb_wrapper.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_mmdb_wrapper.lo `test -f 'clipper_mmdb_wrapper.cpp' || echo './'`clipper_mmdb_wrapper.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb_wrapper.cpp -MT clipper_mmdb_wrapper.lo -MD -MP -MF .deps/clipper_mmdb_wrapper.TPlo -fPIC -DPIC -o .libs/clipper_mmdb_wrapper.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb_wrapper.cpp -MT clipper_mmdb_wrapper.lo -MD -MP -MF .deps/clipper_mmdb_wrapper.TPlo -o clipper_mmdb_wrapper.o >/dev/null 2>&1
> source='clipper_mmdb_types.cpp' object='clipper_mmdb_types.lo' libtool=yes \
> depfile='.deps/clipper_mmdb_types.Plo' tmpdepfile='.deps/clipper_mmdb_types.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_mmdb_types.lo `test -f 'clipper_mmdb_types.cpp' || echo './'`clipper_mmdb_types.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb_types.cpp -MT clipper_mmdb_types.lo -MD -MP -MF .deps/clipper_mmdb_types.TPlo -fPIC -DPIC -o .libs/clipper_mmdb_types.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb_types.cpp -MT clipper_mmdb_types.lo -MD -MP -MF .deps/clipper_mmdb_types.TPlo -o clipper_mmdb_types.o >/dev/null 2>&1
> source='container_mmdb.cpp' object='container_mmdb.lo' libtool=yes \
> depfile='.deps/container_mmdb.Plo' tmpdepfile='.deps/container_mmdb.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o container_mmdb.lo `test -f 'container_mmdb.cpp' || echo './'`container_mmdb.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_mmdb.cpp -MT container_mmdb.lo -MD -MP -MF .deps/container_mmdb.TPlo -fPIC -DPIC -o .libs/container_mmdb.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_mmdb.cpp -MT container_mmdb.lo -MD -MP -MF .deps/container_mmdb.TPlo -o container_mmdb.o >/dev/null 2>&1
> /bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-mmdbold.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 clipper_mmdb.lo clipper_mmdb_wrapper.lo clipper_mmdb_types.lo container_mmdb.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/clipper_mmdb.o .libs/clipper_mmdb_wrapper.o .libs/clipper_mmdb_types.o .libs/container_mmdb.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-mmdbold.so.2 -o .libs/libclipper-mmdbold.so.2.0.0
> (cd .libs && rm -f libclipper-mmdbold.so.2 && ln -s libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so.2)
> (cd .libs && rm -f libclipper-mmdbold.so && ln -s libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so)
> ar cru .libs/libclipper-mmdbold.a clipper_mmdb.o clipper_mmdb_wrapper.o clipper_mmdb_types.o container_mmdb.o
> ranlib .libs/libclipper-mmdbold.a
> creating libclipper-mmdbold.la
> (cd .libs && rm -f libclipper-mmdbold.la && ln -s ../libclipper-mmdbold.la libclipper-mmdbold.la)
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-mmdbold.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.la
> /usr/bin/install -c .libs/libclipper-mmdbold.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so.2 || { rm -f libclipper-mmdbold.so.2 && ln -s libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so || { rm -f libclipper-mmdbold.so && ln -s libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so; }; })
> /usr/bin/install -c .libs/libclipper-mmdbold.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.la
> /usr/bin/install -c .libs/libclipper-mmdbold.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold
> mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold
> cp -p clipper_mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/clipper_mmdb.h
> cp -p clipper_mmdb_wrapper.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/clipper_mmdb_wrapper.h
> cp -p clipper_mmdb_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/clipper_mmdb_types.h
> cp -p container_mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/container_mmdb.h
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
> Making install in minimol
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
> source='container_minimol.cpp' object='container_minimol.lo' libtool=yes \
> depfile='.deps/container_minimol.Plo' tmpdepfile='.deps/container_minimol.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o container_minimol.lo `test -f 'container_minimol.cpp' || echo './'`container_minimol.cpp
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_minimol.cpp -MT container_minimol.lo -MD -MP -MF .deps/container_minimol.TPlo -fPIC -DPIC -o .libs/container_minimol.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_minimol.cpp -MT container_minimol.lo -MD -MP -MF .deps/container_minimol.TPlo -o container_minimol.o >/dev/null 2>&1
> source='minimol_data.cpp' object='minimol_data.lo' libtool=yes \
> depfile='.deps/minimol_data.Plo' tmpdepfile='.deps/minimol_data.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o minimol_data.lo `test -f 'minimol_data.cpp' || echo './'`minimol_data.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_data.cpp -MT minimol_data.lo -MD -MP -MF .deps/minimol_data.TPlo -fPIC -DPIC -o .libs/minimol_data.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_data.cpp -MT minimol_data.lo -MD -MP -MF .deps/minimol_data.TPlo -o minimol_data.o >/dev/null 2>&1
> source='minimol_seq.cpp' object='minimol_seq.lo' libtool=yes \
> depfile='.deps/minimol_seq.Plo' tmpdepfile='.deps/minimol_seq.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o minimol_seq.lo `test -f 'minimol_seq.cpp' || echo './'`minimol_seq.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_seq.cpp -MT minimol_seq.lo -MD -MP -MF .deps/minimol_seq.TPlo -fPIC -DPIC -o .libs/minimol_seq.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_seq.cpp -MT minimol_seq.lo -MD -MP -MF .deps/minimol_seq.TPlo -o minimol_seq.o >/dev/null 2>&1
> source='minimol.cpp' object='minimol.lo' libtool=yes \
> depfile='.deps/minimol.Plo' tmpdepfile='.deps/minimol.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o minimol.lo `test -f 'minimol.cpp' || echo './'`minimol.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol.cpp -MT minimol.lo -MD -MP -MF .deps/minimol.TPlo -fPIC -DPIC -o .libs/minimol.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol.cpp -MT minimol.lo -MD -MP -MF .deps/minimol.TPlo -o minimol.o >/dev/null 2>&1
> source='minimol_io.cpp' object='minimol_io.lo' libtool=yes \
> depfile='.deps/minimol_io.Plo' tmpdepfile='.deps/minimol_io.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o minimol_io.lo `test -f 'minimol_io.cpp' || echo './'`minimol_io.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_io.cpp -MT minimol_io.lo -MD -MP -MF .deps/minimol_io.TPlo -fPIC -DPIC -o .libs/minimol_io.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_io.cpp -MT minimol_io.lo -MD -MP -MF .deps/minimol_io.TPlo -o minimol_io.o >/dev/null 2>&1
> source='minimol_utils.cpp' object='minimol_utils.lo' libtool=yes \
> depfile='.deps/minimol_utils.Plo' tmpdepfile='.deps/minimol_utils.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o minimol_utils.lo `test -f 'minimol_utils.cpp' || echo './'`minimol_utils.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_utils.cpp -MT minimol_utils.lo -MD -MP -MF .deps/minimol_utils.TPlo -fPIC -DPIC -o .libs/minimol_utils.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_utils.cpp -MT minimol_utils.lo -MD -MP -MF .deps/minimol_utils.TPlo -o minimol_utils.o >/dev/null 2>&1
> /bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-minimol.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 container_minimol.lo minimol_data.lo minimol_seq.lo minimol.lo minimol_io.lo minimol_utils.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/container_minimol.o .libs/minimol_data.o .libs/minimol_seq.o .libs/minimol.o .libs/minimol_io.o .libs/minimol_utils.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-minimol.so.2 -o .libs/libclipper-minimol.so.2.0.0
> (cd .libs && rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.0 libclipper-minimol.so.2)
> (cd .libs && rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.0 libclipper-minimol.so)
> ar cru .libs/libclipper-minimol.a container_minimol.o minimol_data.o minimol_seq.o minimol.o minimol_io.o minimol_utils.o
> ranlib .libs/libclipper-minimol.a
> creating libclipper-minimol.la
> (cd .libs && rm -f libclipper-minimol.la && ln -s ../libclipper-minimol.la libclipper-minimol.la)
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-minimol.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.la
> /usr/bin/install -c .libs/libclipper-minimol.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-minimol.so.2.0.0 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.0 libclipper-minimol.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-minimol.so.2.0.0 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.0 libclipper-minimol.so; }; })
> /usr/bin/install -c .libs/libclipper-minimol.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.la
> /usr/bin/install -c .libs/libclipper-minimol.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol
> mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol
> cp -p container_minimol.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/container_minimol.h
> cp -p minimol_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_data.h
> cp -p minimol_seq.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_seq.h
> cp -p minimol.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol.h
> cp -p minimol_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_io.h
> cp -p minimol_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_utils.h
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
> Making install in ccp4
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
> source='ccp4_mtz_types.cpp' object='ccp4_mtz_types.lo' libtool=yes \
> depfile='.deps/ccp4_mtz_types.Plo' tmpdepfile='.deps/ccp4_mtz_types.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o ccp4_mtz_types.lo `test -f 'ccp4_mtz_types.cpp' || echo './'`ccp4_mtz_types.cpp
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_mtz_types.cpp -MT ccp4_mtz_types.lo -MD -MP -MF .deps/ccp4_mtz_types.TPlo -fPIC -DPIC -o .libs/ccp4_mtz_types.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_mtz_types.cpp -MT ccp4_mtz_types.lo -MD -MP -MF .deps/ccp4_mtz_types.TPlo -o ccp4_mtz_types.o >/dev/null 2>&1
> source='ccp4_mtz_io.cpp' object='ccp4_mtz_io.lo' libtool=yes \
> depfile='.deps/ccp4_mtz_io.Plo' tmpdepfile='.deps/ccp4_mtz_io.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o ccp4_mtz_io.lo `test -f 'ccp4_mtz_io.cpp' || echo './'`ccp4_mtz_io.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_mtz_io.cpp -MT ccp4_mtz_io.lo -MD -MP -MF .deps/ccp4_mtz_io.TPlo -fPIC -DPIC -o .libs/ccp4_mtz_io.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_mtz_io.cpp -MT ccp4_mtz_io.lo -MD -MP -MF .deps/ccp4_mtz_io.TPlo -o ccp4_mtz_io.o >/dev/null 2>&1
> source='ccp4_map_io.cpp' object='ccp4_map_io.lo' libtool=yes \
> depfile='.deps/ccp4_map_io.Plo' tmpdepfile='.deps/ccp4_map_io.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o ccp4_map_io.lo `test -f 'ccp4_map_io.cpp' || echo './'`ccp4_map_io.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_map_io.cpp -MT ccp4_map_io.lo -MD -MP -MF .deps/ccp4_map_io.TPlo -fPIC -DPIC -o .libs/ccp4_map_io.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_map_io.cpp -MT ccp4_map_io.lo -MD -MP -MF .deps/ccp4_map_io.TPlo -o ccp4_map_io.o >/dev/null 2>&1
> source='ccp4_utils.cpp' object='ccp4_utils.lo' libtool=yes \
> depfile='.deps/ccp4_utils.Plo' tmpdepfile='.deps/ccp4_utils.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o ccp4_utils.lo `test -f 'ccp4_utils.cpp' || echo './'`ccp4_utils.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_utils.cpp -MT ccp4_utils.lo -MD -MP -MF .deps/ccp4_utils.TPlo -fPIC -DPIC -o .libs/ccp4_utils.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_utils.cpp -MT ccp4_utils.lo -MD -MP -MF .deps/ccp4_utils.TPlo -o ccp4_utils.o >/dev/null 2>&1
> /bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-ccp4.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 ccp4_mtz_types.lo ccp4_mtz_io.lo ccp4_map_io.lo ccp4_utils.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/ccp4_mtz_types.o .libs/ccp4_mtz_io.o .libs/ccp4_map_io.o .libs/ccp4_utils.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-ccp4.so.2 -o .libs/libclipper-ccp4.so.2.0.0
> (cd .libs && rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.0 libclipper-ccp4.so.2)
> (cd .libs && rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.0 libclipper-ccp4.so)
> ar cru .libs/libclipper-ccp4.a ccp4_mtz_types.o ccp4_mtz_io.o ccp4_map_io.o ccp4_utils.o
> ranlib .libs/libclipper-ccp4.a
> creating libclipper-ccp4.la
> (cd .libs && rm -f libclipper-ccp4.la && ln -s ../libclipper-ccp4.la libclipper-ccp4.la)
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-ccp4.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.la
> /usr/bin/install -c .libs/libclipper-ccp4.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-ccp4.so.2.0.0 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.0 libclipper-ccp4.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-ccp4.so.2.0.0 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.0 libclipper-ccp4.so; }; })
> /usr/bin/install -c .libs/libclipper-ccp4.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.la
> /usr/bin/install -c .libs/libclipper-ccp4.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4
> mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4
> cp -p ccp4_map_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_map_io.h
> cp -p ccp4_mtz_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_mtz_io.h
> cp -p ccp4_mtz_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_mtz_types.h
> cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_utils.h
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
> Making install in cns
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
> source='cns_hkl_io.cpp' object='cns_hkl_io.lo' libtool=yes \
> depfile='.deps/cns_hkl_io.Plo' tmpdepfile='.deps/cns_hkl_io.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o cns_hkl_io.lo `test -f 'cns_hkl_io.cpp' || echo './'`cns_hkl_io.cpp
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cns_hkl_io.cpp -MT cns_hkl_io.lo -MD -MP -MF .deps/cns_hkl_io.TPlo -fPIC -DPIC -o .libs/cns_hkl_io.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cns_hkl_io.cpp -MT cns_hkl_io.lo -MD -MP -MF .deps/cns_hkl_io.TPlo -o cns_hkl_io.o >/dev/null 2>&1
> source='cns_map_io.cpp' object='cns_map_io.lo' libtool=yes \
> depfile='.deps/cns_map_io.Plo' tmpdepfile='.deps/cns_map_io.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o cns_map_io.lo `test -f 'cns_map_io.cpp' || echo './'`cns_map_io.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cns_map_io.cpp -MT cns_map_io.lo -MD -MP -MF .deps/cns_map_io.TPlo -fPIC -DPIC -o .libs/cns_map_io.o
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = unsigned char]':
> cns_map_io.cpp:472: instantiated from here
> cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = char]':
> cns_map_io.cpp:473: instantiated from here
> cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = short unsigned int]':
> cns_map_io.cpp:474: instantiated from here
> cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = short int]':
> cns_map_io.cpp:475: instantiated from here
> cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = unsigned int]':
> cns_map_io.cpp:476: instantiated from here
> cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = int]':
> cns_map_io.cpp:477: instantiated from here
> cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = float]':
> cns_map_io.cpp:478: instantiated from here
> cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = double]':
> cns_map_io.cpp:479: instantiated from here
> cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = unsigned char]':
> cns_map_io.cpp:490: instantiated from here
> cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = char]':
> cns_map_io.cpp:491: instantiated from here
> cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = short unsigned int]':
> cns_map_io.cpp:492: instantiated from here
> cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = short int]':
> cns_map_io.cpp:493: instantiated from here
> cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = unsigned int]':
> cns_map_io.cpp:494: instantiated from here
> cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = int]':
> cns_map_io.cpp:495: instantiated from here
> cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = float]':
> cns_map_io.cpp:496: instantiated from here
> cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = double]':
> cns_map_io.cpp:497: instantiated from here
> cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cns_map_io.cpp -MT cns_map_io.lo -MD -MP -MF .deps/cns_map_io.TPlo -o cns_map_io.o >/dev/null 2>&1
> /bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-cns.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib cns_hkl_io.lo cns_map_io.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/cns_hkl_io.o .libs/cns_map_io.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-cns.so.0 -o .libs/libclipper-cns.so.0.0.0
> (cd .libs && rm -f libclipper-cns.so.0 && ln -s libclipper-cns.so.0.0.0 libclipper-cns.so.0)
> (cd .libs && rm -f libclipper-cns.so && ln -s libclipper-cns.so.0.0.0 libclipper-cns.so)
> ar cru .libs/libclipper-cns.a cns_hkl_io.o cns_map_io.o
> ranlib .libs/libclipper-cns.a
> creating libclipper-cns.la
> (cd .libs && rm -f libclipper-cns.la && ln -s ../libclipper-cns.la libclipper-cns.la)
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-cns.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.la
> /usr/bin/install -c .libs/libclipper-cns.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.so.0.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cns.so.0.0.0 libclipper-cns.so.0 || { rm -f libclipper-cns.so.0 && ln -s libclipper-cns.so.0.0.0 libclipper-cns.so.0; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cns.so.0.0.0 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.0.0.0 libclipper-cns.so; }; })
> /usr/bin/install -c .libs/libclipper-cns.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.la
> /usr/bin/install -c .libs/libclipper-cns.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns
> mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns
> cp -p cns_hkl_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns/cns_hkl_io.h
> cp -p cns_map_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns/cns_map_io.h
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
> Making install in core
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
> source='atomsf.cpp' object='atomsf.lo' libtool=yes \
> depfile='.deps/atomsf.Plo' tmpdepfile='.deps/atomsf.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c atomsf.cpp -MT atomsf.lo -MD -MP -MF .deps/atomsf.TPlo -fPIC -DPIC -o .libs/atomsf.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c atomsf.cpp -MT atomsf.lo -MD -MP -MF .deps/atomsf.TPlo -o atomsf.o >/dev/null 2>&1
> source='coords.cpp' object='coords.lo' libtool=yes \
> depfile='.deps/coords.Plo' tmpdepfile='.deps/coords.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c coords.cpp -MT coords.lo -MD -MP -MF .deps/coords.TPlo -fPIC -DPIC -o .libs/coords.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c coords.cpp -MT coords.lo -MD -MP -MF .deps/coords.TPlo -o coords.o >/dev/null 2>&1
> source='nxmap_operator.cpp' object='nxmap_operator.lo' libtool=yes \
> depfile='.deps/nxmap_operator.Plo' tmpdepfile='.deps/nxmap_operator.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c nxmap_operator.cpp -MT nxmap_operator.lo -MD -MP -MF .deps/nxmap_operator.TPlo -fPIC -DPIC -o .libs/nxmap_operator.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c nxmap_operator.cpp -MT nxmap_operator.lo -MD -MP -MF .deps/nxmap_operator.TPlo -o nxmap_operator.o >/dev/null 2>&1
> source='cell.cpp' object='cell.lo' libtool=yes \
> depfile='.deps/cell.Plo' tmpdepfile='.deps/cell.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cell.cpp -MT cell.lo -MD -MP -MF .deps/cell.TPlo -fPIC -DPIC -o .libs/cell.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cell.cpp -MT cell.lo -MD -MP -MF .deps/cell.TPlo -o cell.o >/dev/null 2>&1
> source='derivs.cpp' object='derivs.lo' libtool=yes \
> depfile='.deps/derivs.Plo' tmpdepfile='.deps/derivs.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c derivs.cpp -MT derivs.lo -MD -MP -MF .deps/derivs.TPlo -fPIC -DPIC -o .libs/derivs.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c derivs.cpp -MT derivs.lo -MD -MP -MF .deps/derivs.TPlo -o derivs.o >/dev/null 2>&1
> source='ramachandran.cpp' object='ramachandran.lo' libtool=yes \
> depfile='.deps/ramachandran.Plo' tmpdepfile='.deps/ramachandran.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ramachandran.cpp -MT ramachandran.lo -MD -MP -MF .deps/ramachandran.TPlo -fPIC -DPIC -o .libs/ramachandran.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ramachandran.cpp -MT ramachandran.lo -MD -MP -MF .deps/ramachandran.TPlo -o ramachandran.o >/dev/null 2>&1
> source='clipper_instance.cpp' object='clipper_instance.lo' libtool=yes \
> depfile='.deps/clipper_instance.Plo' tmpdepfile='.deps/clipper_instance.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_instance.cpp -MT clipper_instance.lo -MD -MP -MF .deps/clipper_instance.TPlo -fPIC -DPIC -o .libs/clipper_instance.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_instance.cpp -MT clipper_instance.lo -MD -MP -MF .deps/clipper_instance.TPlo -o clipper_instance.o >/dev/null 2>&1
> source='fftmap.cpp' object='fftmap.lo' libtool=yes \
> depfile='.deps/fftmap.Plo' tmpdepfile='.deps/fftmap.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c fftmap.cpp -MT fftmap.lo -MD -MP -MF .deps/fftmap.TPlo -fPIC -DPIC -o .libs/fftmap.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c fftmap.cpp -MT fftmap.lo -MD -MP -MF .deps/fftmap.TPlo -o fftmap.o >/dev/null 2>&1
> source='resol_basisfn.cpp' object='resol_basisfn.lo' libtool=yes \
> depfile='.deps/resol_basisfn.Plo' tmpdepfile='.deps/resol_basisfn.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c resol_basisfn.cpp -MT resol_basisfn.lo -MD -MP -MF .deps/resol_basisfn.TPlo -fPIC -DPIC -o .libs/resol_basisfn.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c resol_basisfn.cpp -MT resol_basisfn.lo -MD -MP -MF .deps/resol_basisfn.TPlo -o resol_basisfn.o >/dev/null 2>&1
> source='clipper_memory.cpp' object='clipper_memory.lo' libtool=yes \
> depfile='.deps/clipper_memory.Plo' tmpdepfile='.deps/clipper_memory.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_memory.cpp -MT clipper_memory.lo -MD -MP -MF .deps/clipper_memory.TPlo -fPIC -DPIC -o .libs/clipper_memory.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_memory.cpp -MT clipper_memory.lo -MD -MP -MF .deps/clipper_memory.TPlo -o clipper_memory.o >/dev/null 2>&1
> source='fftmap_sparse.cpp' object='fftmap_sparse.lo' libtool=yes \
> depfile='.deps/fftmap_sparse.Plo' tmpdepfile='.deps/fftmap_sparse.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c fftmap_sparse.cpp -MT fftmap_sparse.lo -MD -MP -MF .deps/fftmap_sparse.TPlo -fPIC -DPIC -o .libs/fftmap_sparse.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c fftmap_sparse.cpp -MT fftmap_sparse.lo -MD -MP -MF .deps/fftmap_sparse.TPlo -o fftmap_sparse.o >/dev/null 2>&1
> source='resol_fn.cpp' object='resol_fn.lo' libtool=yes \
> depfile='.deps/resol_fn.Plo' tmpdepfile='.deps/resol_fn.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c resol_fn.cpp -MT resol_fn.lo -MD -MP -MF .deps/resol_fn.TPlo -fPIC -DPIC -o .libs/resol_fn.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c resol_fn.cpp -MT resol_fn.lo -MD -MP -MF .deps/resol_fn.TPlo -o resol_fn.o >/dev/null 2>&1
> source='clipper_message.cpp' object='clipper_message.lo' libtool=yes \
> depfile='.deps/clipper_message.Plo' tmpdepfile='.deps/clipper_message.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_message.cpp -MT clipper_message.lo -MD -MP -MF .deps/clipper_message.TPlo -fPIC -DPIC -o .libs/clipper_message.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_message.cpp -MT clipper_message.lo -MD -MP -MF .deps/clipper_message.TPlo -o clipper_message.o >/dev/null 2>&1
> source='hkl_compute.cpp' object='hkl_compute.lo' libtool=yes \
> depfile='.deps/hkl_compute.Plo' tmpdepfile='.deps/hkl_compute.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_compute.cpp -MT hkl_compute.lo -MD -MP -MF .deps/hkl_compute.TPlo -fPIC -DPIC -o .libs/hkl_compute.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_compute.cpp -MT hkl_compute.lo -MD -MP -MF .deps/hkl_compute.TPlo -o hkl_compute.o >/dev/null 2>&1
> source='resol_targetfn.cpp' object='resol_targetfn.lo' libtool=yes \
> depfile='.deps/resol_targetfn.Plo' tmpdepfile='.deps/resol_targetfn.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c resol_targetfn.cpp -MT resol_targetfn.lo -MD -MP -MF .deps/resol_targetfn.TPlo -fPIC -DPIC -o .libs/resol_targetfn.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c resol_targetfn.cpp -MT resol_targetfn.lo -MD -MP -MF .deps/resol_targetfn.TPlo -o resol_targetfn.o >/dev/null 2>&1
> source='clipper_stats.cpp' object='clipper_stats.lo' libtool=yes \
> depfile='.deps/clipper_stats.Plo' tmpdepfile='.deps/clipper_stats.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_stats.cpp -MT clipper_stats.lo -MD -MP -MF .deps/clipper_stats.TPlo -fPIC -DPIC -o .libs/clipper_stats.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_stats.cpp -MT clipper_stats.lo -MD -MP -MF .deps/clipper_stats.TPlo -o clipper_stats.o >/dev/null 2>&1
> source='hkl_data.cpp' object='hkl_data.lo' libtool=yes \
> depfile='.deps/hkl_data.Plo' tmpdepfile='.deps/hkl_data.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o hkl_data.lo `test -f 'hkl_data.cpp' || echo './'`hkl_data.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_data.cpp -MT hkl_data.lo -MD -MP -MF .deps/hkl_data.TPlo -fPIC -DPIC -o .libs/hkl_data.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_data.cpp -MT hkl_data.lo -MD -MP -MF .deps/hkl_data.TPlo -o hkl_data.o >/dev/null 2>&1
> source='rotation.cpp' object='rotation.lo' libtool=yes \
> depfile='.deps/rotation.Plo' tmpdepfile='.deps/rotation.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o rotation.lo `test -f 'rotation.cpp' || echo './'`rotation.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c rotation.cpp -MT rotation.lo -MD -MP -MF .deps/rotation.TPlo -fPIC -DPIC -o .libs/rotation.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c rotation.cpp -MT rotation.lo -MD -MP -MF .deps/rotation.TPlo -o rotation.o >/dev/null 2>&1
> source='clipper_test.cpp' object='clipper_test.lo' libtool=yes \
> depfile='.deps/clipper_test.Plo' tmpdepfile='.deps/clipper_test.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_test.lo `test -f 'clipper_test.cpp' || echo './'`clipper_test.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_test.cpp -MT clipper_test.lo -MD -MP -MF .deps/clipper_test.TPlo -fPIC -DPIC -o .libs/clipper_test.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_test.cpp -MT clipper_test.lo -MD -MP -MF .deps/clipper_test.TPlo -o clipper_test.o >/dev/null 2>&1
> source='hkl_datatypes.cpp' object='hkl_datatypes.lo' libtool=yes \
> depfile='.deps/hkl_datatypes.Plo' tmpdepfile='.deps/hkl_datatypes.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o hkl_datatypes.lo `test -f 'hkl_datatypes.cpp' || echo './'`hkl_datatypes.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_datatypes.cpp -MT hkl_datatypes.lo -MD -MP -MF .deps/hkl_datatypes.TPlo -fPIC -DPIC -o .libs/hkl_datatypes.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_datatypes.cpp -MT hkl_datatypes.lo -MD -MP -MF .deps/hkl_datatypes.TPlo -o hkl_datatypes.o >/dev/null 2>&1
> source='spacegroup.cpp' object='spacegroup.lo' libtool=yes \
> depfile='.deps/spacegroup.Plo' tmpdepfile='.deps/spacegroup.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o spacegroup.lo `test -f 'spacegroup.cpp' || echo './'`spacegroup.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c spacegroup.cpp -MT spacegroup.lo -MD -MP -MF .deps/spacegroup.TPlo -fPIC -DPIC -o .libs/spacegroup.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c spacegroup.cpp -MT spacegroup.lo -MD -MP -MF .deps/spacegroup.TPlo -o spacegroup.o >/dev/null 2>&1
> source='clipper_types.cpp' object='clipper_types.lo' libtool=yes \
> depfile='.deps/clipper_types.Plo' tmpdepfile='.deps/clipper_types.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_types.lo `test -f 'clipper_types.cpp' || echo './'`clipper_types.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_types.cpp -MT clipper_types.lo -MD -MP -MF .deps/clipper_types.TPlo -fPIC -DPIC -o .libs/clipper_types.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_types.cpp -MT clipper_types.lo -MD -MP -MF .deps/clipper_types.TPlo -o clipper_types.o >/dev/null 2>&1
> source='hkl_info.cpp' object='hkl_info.lo' libtool=yes \
> depfile='.deps/hkl_info.Plo' tmpdepfile='.deps/hkl_info.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o hkl_info.lo `test -f 'hkl_info.cpp' || echo './'`hkl_info.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_info.cpp -MT hkl_info.lo -MD -MP -MF .deps/hkl_info.TPlo -fPIC -DPIC -o .libs/hkl_info.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_info.cpp -MT hkl_info.lo -MD -MP -MF .deps/hkl_info.TPlo -o hkl_info.o >/dev/null 2>&1
> source='spacegroup_data.cpp' object='spacegroup_data.lo' libtool=yes \
> depfile='.deps/spacegroup_data.Plo' tmpdepfile='.deps/spacegroup_data.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o spacegroup_data.lo `test -f 'spacegroup_data.cpp' || echo './'`spacegroup_data.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c spacegroup_data.cpp -MT spacegroup_data.lo -MD -MP -MF .deps/spacegroup_data.TPlo -fPIC -DPIC -o .libs/spacegroup_data.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c spacegroup_data.cpp -MT spacegroup_data.lo -MD -MP -MF .deps/spacegroup_data.TPlo -o spacegroup_data.o >/dev/null 2>&1
> source='clipper_util.cpp' object='clipper_util.lo' libtool=yes \
> depfile='.deps/clipper_util.Plo' tmpdepfile='.deps/clipper_util.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_util.lo `test -f 'clipper_util.cpp' || echo './'`clipper_util.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_util.cpp -MT clipper_util.lo -MD -MP -MF .deps/clipper_util.TPlo -fPIC -DPIC -o .libs/clipper_util.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_util.cpp -MT clipper_util.lo -MD -MP -MF .deps/clipper_util.TPlo -o clipper_util.o >/dev/null 2>&1
> source='hkl_lookup.cpp' object='hkl_lookup.lo' libtool=yes \
> depfile='.deps/hkl_lookup.Plo' tmpdepfile='.deps/hkl_lookup.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o hkl_lookup.lo `test -f 'hkl_lookup.cpp' || echo './'`hkl_lookup.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_lookup.cpp -MT hkl_lookup.lo -MD -MP -MF .deps/hkl_lookup.TPlo -fPIC -DPIC -o .libs/hkl_lookup.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_lookup.cpp -MT hkl_lookup.lo -MD -MP -MF .deps/hkl_lookup.TPlo -o hkl_lookup.o >/dev/null 2>&1
> source='symop.cpp' object='symop.lo' libtool=yes \
> depfile='.deps/symop.Plo' tmpdepfile='.deps/symop.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o symop.lo `test -f 'symop.cpp' || echo './'`symop.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c symop.cpp -MT symop.lo -MD -MP -MF .deps/symop.TPlo -fPIC -DPIC -o .libs/symop.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c symop.cpp -MT symop.lo -MD -MP -MF .deps/symop.TPlo -o symop.o >/dev/null 2>&1
> source='container.cpp' object='container.lo' libtool=yes \
> depfile='.deps/container.Plo' tmpdepfile='.deps/container.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o container.lo `test -f 'container.cpp' || echo './'`container.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container.cpp -MT container.lo -MD -MP -MF .deps/container.TPlo -fPIC -DPIC -o .libs/container.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container.cpp -MT container.lo -MD -MP -MF .deps/container.TPlo -o container.o >/dev/null 2>&1
> source='hkl_operators.cpp' object='hkl_operators.lo' libtool=yes \
> depfile='.deps/hkl_operators.Plo' tmpdepfile='.deps/hkl_operators.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o hkl_operators.lo `test -f 'hkl_operators.cpp' || echo './'`hkl_operators.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_operators.cpp -MT hkl_operators.lo -MD -MP -MF .deps/hkl_operators.TPlo -fPIC -DPIC -o .libs/hkl_operators.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_operators.cpp -MT hkl_operators.lo -MD -MP -MF .deps/hkl_operators.TPlo -o hkl_operators.o >/dev/null 2>&1
> source='container_hkl.cpp' object='container_hkl.lo' libtool=yes \
> depfile='.deps/container_hkl.Plo' tmpdepfile='.deps/container_hkl.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o container_hkl.lo `test -f 'container_hkl.cpp' || echo './'`container_hkl.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_hkl.cpp -MT container_hkl.lo -MD -MP -MF .deps/container_hkl.TPlo -fPIC -DPIC -o .libs/container_hkl.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_hkl.cpp -MT container_hkl.lo -MD -MP -MF .deps/container_hkl.TPlo -o container_hkl.o >/dev/null 2>&1
> source='map_interp.cpp' object='map_interp.lo' libtool=yes \
> depfile='.deps/map_interp.Plo' tmpdepfile='.deps/map_interp.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o map_interp.lo `test -f 'map_interp.cpp' || echo './'`map_interp.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c map_interp.cpp -MT map_interp.lo -MD -MP -MF .deps/map_interp.TPlo -fPIC -DPIC -o .libs/map_interp.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c map_interp.cpp -MT map_interp.lo -MD -MP -MF .deps/map_interp.TPlo -o map_interp.o >/dev/null 2>&1
> source='container_map.cpp' object='container_map.lo' libtool=yes \
> depfile='.deps/container_map.Plo' tmpdepfile='.deps/container_map.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o container_map.lo `test -f 'container_map.cpp' || echo './'`container_map.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_map.cpp -MT container_map.lo -MD -MP -MF .deps/container_map.TPlo -fPIC -DPIC -o .libs/container_map.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_map.cpp -MT container_map.lo -MD -MP -MF .deps/container_map.TPlo -o container_map.o >/dev/null 2>&1
> source='map_utils.cpp' object='map_utils.lo' libtool=yes \
> depfile='.deps/map_utils.Plo' tmpdepfile='.deps/map_utils.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o map_utils.lo `test -f 'map_utils.cpp' || echo './'`map_utils.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c map_utils.cpp -MT map_utils.lo -MD -MP -MF .deps/map_utils.TPlo -fPIC -DPIC -o .libs/map_utils.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c map_utils.cpp -MT map_utils.lo -MD -MP -MF .deps/map_utils.TPlo -o map_utils.o >/dev/null 2>&1
> source='xmap.cpp' object='xmap.lo' libtool=yes \
> depfile='.deps/xmap.Plo' tmpdepfile='.deps/xmap.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o xmap.lo `test -f 'xmap.cpp' || echo './'`xmap.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c xmap.cpp -MT xmap.lo -MD -MP -MF .deps/xmap.TPlo -fPIC -DPIC -o .libs/xmap.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c xmap.cpp -MT xmap.lo -MD -MP -MF .deps/xmap.TPlo -o xmap.o >/dev/null 2>&1
> source='container_types.cpp' object='container_types.lo' libtool=yes \
> depfile='.deps/container_types.Plo' tmpdepfile='.deps/container_types.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o container_types.lo `test -f 'container_types.cpp' || echo './'`container_types.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_types.cpp -MT container_types.lo -MD -MP -MF .deps/container_types.TPlo -fPIC -DPIC -o .libs/container_types.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_types.cpp -MT container_types.lo -MD -MP -MF .deps/container_types.TPlo -o container_types.o >/dev/null 2>&1
> source='nxmap.cpp' object='nxmap.lo' libtool=yes \
> depfile='.deps/nxmap.Plo' tmpdepfile='.deps/nxmap.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o nxmap.lo `test -f 'nxmap.cpp' || echo './'`nxmap.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c nxmap.cpp -MT nxmap.lo -MD -MP -MF .deps/nxmap.TPlo -fPIC -DPIC -o .libs/nxmap.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c nxmap.cpp -MT nxmap.lo -MD -MP -MF .deps/nxmap.TPlo -o nxmap.o >/dev/null 2>&1
> source='test_core.cpp' object='test_core.lo' libtool=yes \
> depfile='.deps/test_core.Plo' tmpdepfile='.deps/test_core.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o test_core.lo `test -f 'test_core.cpp' || echo './'`test_core.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c test_core.cpp -MT test_core.lo -MD -MP -MF .deps/test_core.TPlo -fPIC -DPIC -o .libs/test_core.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c test_core.cpp -MT test_core.lo -MD -MP -MF .deps/test_core.TPlo -o test_core.o >/dev/null 2>&1
> source='test_data.cpp' object='test_data.lo' libtool=yes \
> depfile='.deps/test_data.Plo' tmpdepfile='.deps/test_data.TPlo' \
> depmode=gcc3 /bin/sh ../../depcomp \
> /bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o test_data.lo `test -f 'test_data.cpp' || echo './'`test_data.cpp
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c test_data.cpp -MT test_data.lo -MD -MP -MF .deps/test_data.TPlo -fPIC -DPIC -o .libs/test_data.o
> x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c test_data.cpp -MT test_data.lo -MD -MP -MF .deps/test_data.TPlo -o test_data.o >/dev/null 2>&1
> /bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-core.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 atomsf.lo coords.lo nxmap_operator.lo cell.lo derivs.lo ramachandran.lo clipper_instance.lo fftmap.lo resol_basisfn.lo clipper_memory.lo fftmap_sparse.lo resol_fn.lo clipper_message.lo hkl_compute.lo resol_targetfn.lo clipper_stats.lo hkl_data.lo rotation.lo clipper_test.lo hkl_datatypes.lo spacegroup.lo clipper_types.lo hkl_info.lo spacegroup_data.lo clipper_util.lo hkl_lookup.lo symop.lo container.lo hkl_operators.lo container_hkl.lo map_interp.lo container_map.lo map_utils.lo xmap.lo container_types.lo nxmap.lo test_core.lo test_data.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/atomsf.o .libs/coords.o .libs/nxmap_operator.o .libs/cell.o .libs/derivs.o .libs/ramachandran.o .libs/clipper_instance.o .libs/fftmap.o .libs/resol_basisfn.o .libs/clipper_memory.o .libs/fftmap_sparse.o .libs/resol_fn.o .libs/clipper_message.o .libs/hkl_compute.o .libs/resol_targetfn.o .libs/clipper_stats.o .libs/hkl_data.o .libs/rotation.o .libs/clipper_test.o .libs/hkl_datatypes.o .libs/spacegroup.o .libs/clipper_types.o .libs/hkl_info.o .libs/spacegroup_data.o .libs/clipper_util.o .libs/hkl_lookup.o .libs/symop.o .libs/container.o .libs/hkl_operators.o .libs/container_hkl.o .libs/map_interp.o .libs/container_map.o .libs/map_utils.o .libs/xmap.o .libs/container_types.o .libs/nxmap.o .libs/test_core.o .libs/test_data.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../.!
./lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-core.so.2 -o .libs/libclipper-core.so.2.0.0
> (cd .libs && rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.0 libclipper-core.so.2)
> (cd .libs && rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.0 libclipper-core.so)
> ar cru .libs/libclipper-core.a atomsf.o coords.o nxmap_operator.o cell.o derivs.o ramachandran.o clipper_instance.o fftmap.o resol_basisfn.o clipper_memory.o fftmap_sparse.o resol_fn.o clipper_message.o hkl_compute.o resol_targetfn.o clipper_stats.o hkl_data.o rotation.o clipper_test.o hkl_datatypes.o spacegroup.o clipper_types.o hkl_info.o spacegroup_data.o clipper_util.o hkl_lookup.o symop.o container.o hkl_operators.o container_hkl.o map_interp.o container_map.o map_utils.o xmap.o container_types.o nxmap.o test_core.o test_data.o
> ranlib .libs/libclipper-core.a
> creating libclipper-core.la
> (cd .libs && rm -f libclipper-core.la && ln -s ../libclipper-core.la libclipper-core.la)
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-core.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.la
> /usr/bin/install -c .libs/libclipper-core.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-core.so.2.0.0 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.0 libclipper-core.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-core.so.2.0.0 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.0 libclipper-core.so; }; })
> /usr/bin/install -c .libs/libclipper-core.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.la
> /usr/bin/install -c .libs/libclipper-core.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core
> mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core
> cp -p atomsf.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/atomsf.h
> cp -p container_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container_types.h
> cp -p nxmap_operator.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/nxmap_operator.h
> cp -p cell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/cell.h
> cp -p coords.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/coords.h
> cp -p ramachandran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/ramachandran.h
> cp -p clipper_instance.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_instance.h
> cp -p derivs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/derivs.h
> cp -p resol_basisfn.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/resol_basisfn.h
> cp -p clipper_memory.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_memory.h
> cp -p fftmap.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/fftmap.h
> cp -p resol_fn.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/resol_fn.h
> cp -p clipper_message.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_message.h
> cp -p fftmap_sparse.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/fftmap_sparse.h
> cp -p resol_targetfn.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/resol_targetfn.h
> cp -p clipper_precision.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_precision.h
> cp -p hkl_compute.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_compute.h
> cp -p rotation.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/rotation.h
> cp -p clipper_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_stats.h
> cp -p hkl_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_data.h
> cp -p spacegroup.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/spacegroup.h
> cp -p clipper_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_sysdep.h
> cp -p hkl_datatypes.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_datatypes.h
> cp -p spacegroup_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/spacegroup_data.h
> cp -p clipper_test.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_test.h
> cp -p hkl_info.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_info.h
> cp -p symop.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/symop.h
> cp -p clipper_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_types.h
> cp -p hkl_lookup.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_lookup.h
> cp -p clipper_util.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_util.h
> cp -p hkl_operators.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_operators.h
> cp -p container.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container.h
> cp -p map_interp.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/map_interp.h
> cp -p xmap.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/xmap.h
> cp -p container_hkl.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container_hkl.h
> cp -p map_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/map_utils.h
> cp -p container_map.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container_map.h
> cp -p nxmap.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/nxmap.h
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> make[5]: Nothing to be done for `install-exec-am'.
> /bin/sh ../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper
> cp -p clipper-ccp4.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-ccp4.h
> cp -p clipper-contrib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-contrib.h
> cp -p clipper-phs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-phs.h
> cp -p clipper-cctbx.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-cctbx.h
> cp -p clipper-minimol.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-minimol.h
> cp -p clipper.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper.h
> cp -p clipper-cif.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-cif.h
> cp -p clipper-mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-mmdb.h
> cp -p minimal-clipper-hkl.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimal-clipper-hkl.h
> cp -p clipper-cns.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-cns.h
> cp -p clipper-mmdbold.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-mmdbold.h
> cp -p minimal-clipper-map.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimal-clipper-map.h
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> Making install in examples
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/examples'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/examples'
> make[4]: Nothing to be done for `install-exec-am'.
> make[4]: Nothing to be done for `install-data-am'.
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/examples'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/examples'
> Making install in dox
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/dox'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/dox'
> make[4]: Nothing to be done for `install-exec-am'.
> make[4]: Nothing to be done for `install-data-am'.
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/dox'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/dox'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper'
> /bin/sh ./mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin
> mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin
> /usr/bin/install -c clipper-config /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/clipper-config
> make[4]: Nothing to be done for `install-data-am'.
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper'
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> Making install in CBFlib
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> Making install in src
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf.lo -MD -MP -MF .deps/cbf.Tpo -c -o cbf.lo cbf.c
> mkdir .libs
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf.lo -MD -MP -MF .deps/cbf.Tpo -c cbf.c -fPIC -DPIC -o .libs/cbf.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf.lo -MD -MP -MF .deps/cbf.Tpo -c cbf.c -fPIC -DPIC -o cbf.o >/dev/null 2>&1
> mv -f .deps/cbf.Tpo .deps/cbf.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_alloc.lo -MD -MP -MF .deps/cbf_alloc.Tpo -c -o cbf_alloc.lo cbf_alloc.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_alloc.lo -MD -MP -MF .deps/cbf_alloc.Tpo -c cbf_alloc.c -fPIC -DPIC -o .libs/cbf_alloc.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_alloc.lo -MD -MP -MF .deps/cbf_alloc.Tpo -c cbf_alloc.c -fPIC -DPIC -o cbf_alloc.o >/dev/null 2>&1
> mv -f .deps/cbf_alloc.Tpo .deps/cbf_alloc.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_ascii.lo -MD -MP -MF .deps/cbf_ascii.Tpo -c -o cbf_ascii.lo cbf_ascii.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_ascii.lo -MD -MP -MF .deps/cbf_ascii.Tpo -c cbf_ascii.c -fPIC -DPIC -o .libs/cbf_ascii.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_ascii.lo -MD -MP -MF .deps/cbf_ascii.Tpo -c cbf_ascii.c -fPIC -DPIC -o cbf_ascii.o >/dev/null 2>&1
> mv -f .deps/cbf_ascii.Tpo .deps/cbf_ascii.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_binary.lo -MD -MP -MF .deps/cbf_binary.Tpo -c -o cbf_binary.lo cbf_binary.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_binary.lo -MD -MP -MF .deps/cbf_binary.Tpo -c cbf_binary.c -fPIC -DPIC -o .libs/cbf_binary.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_binary.lo -MD -MP -MF .deps/cbf_binary.Tpo -c cbf_binary.c -fPIC -DPIC -o cbf_binary.o >/dev/null 2>&1
> mv -f .deps/cbf_binary.Tpo .deps/cbf_binary.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_byte_offset.lo -MD -MP -MF .deps/cbf_byte_offset.Tpo -c -o cbf_byte_offset.lo cbf_byte_offset.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_byte_offset.lo -MD -MP -MF .deps/cbf_byte_offset.Tpo -c cbf_byte_offset.c -fPIC -DPIC -o .libs/cbf_byte_offset.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_byte_offset.lo -MD -MP -MF .deps/cbf_byte_offset.Tpo -c cbf_byte_offset.c -fPIC -DPIC -o cbf_byte_offset.o >/dev/null 2>&1
> mv -f .deps/cbf_byte_offset.Tpo .deps/cbf_byte_offset.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_canonical.lo -MD -MP -MF .deps/cbf_canonical.Tpo -c -o cbf_canonical.lo cbf_canonical.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_canonical.lo -MD -MP -MF .deps/cbf_canonical.Tpo -c cbf_canonical.c -fPIC -DPIC -o .libs/cbf_canonical.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_canonical.lo -MD -MP -MF .deps/cbf_canonical.Tpo -c cbf_canonical.c -fPIC -DPIC -o cbf_canonical.o >/dev/null 2>&1
> mv -f .deps/cbf_canonical.Tpo .deps/cbf_canonical.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_codes.lo -MD -MP -MF .deps/cbf_codes.Tpo -c -o cbf_codes.lo cbf_codes.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_codes.lo -MD -MP -MF .deps/cbf_codes.Tpo -c cbf_codes.c -fPIC -DPIC -o .libs/cbf_codes.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_codes.lo -MD -MP -MF .deps/cbf_codes.Tpo -c cbf_codes.c -fPIC -DPIC -o cbf_codes.o >/dev/null 2>&1
> mv -f .deps/cbf_codes.Tpo .deps/cbf_codes.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_compress.lo -MD -MP -MF .deps/cbf_compress.Tpo -c -o cbf_compress.lo cbf_compress.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_compress.lo -MD -MP -MF .deps/cbf_compress.Tpo -c cbf_compress.c -fPIC -DPIC -o .libs/cbf_compress.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_compress.lo -MD -MP -MF .deps/cbf_compress.Tpo -c cbf_compress.c -fPIC -DPIC -o cbf_compress.o >/dev/null 2>&1
> mv -f .deps/cbf_compress.Tpo .deps/cbf_compress.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_context.lo -MD -MP -MF .deps/cbf_context.Tpo -c -o cbf_context.lo cbf_context.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_context.lo -MD -MP -MF .deps/cbf_context.Tpo -c cbf_context.c -fPIC -DPIC -o .libs/cbf_context.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_context.lo -MD -MP -MF .deps/cbf_context.Tpo -c cbf_context.c -fPIC -DPIC -o cbf_context.o >/dev/null 2>&1
> mv -f .deps/cbf_context.Tpo .deps/cbf_context.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_file.lo -MD -MP -MF .deps/cbf_file.Tpo -c -o cbf_file.lo cbf_file.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_file.lo -MD -MP -MF .deps/cbf_file.Tpo -c cbf_file.c -fPIC -DPIC -o .libs/cbf_file.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_file.lo -MD -MP -MF .deps/cbf_file.Tpo -c cbf_file.c -fPIC -DPIC -o cbf_file.o >/dev/null 2>&1
> mv -f .deps/cbf_file.Tpo .deps/cbf_file.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_lex.lo -MD -MP -MF .deps/cbf_lex.Tpo -c -o cbf_lex.lo cbf_lex.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_lex.lo -MD -MP -MF .deps/cbf_lex.Tpo -c cbf_lex.c -fPIC -DPIC -o .libs/cbf_lex.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_lex.lo -MD -MP -MF .deps/cbf_lex.Tpo -c cbf_lex.c -fPIC -DPIC -o cbf_lex.o >/dev/null 2>&1
> mv -f .deps/cbf_lex.Tpo .deps/cbf_lex.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_packed.lo -MD -MP -MF .deps/cbf_packed.Tpo -c -o cbf_packed.lo cbf_packed.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_packed.lo -MD -MP -MF .deps/cbf_packed.Tpo -c cbf_packed.c -fPIC -DPIC -o .libs/cbf_packed.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_packed.lo -MD -MP -MF .deps/cbf_packed.Tpo -c cbf_packed.c -fPIC -DPIC -o cbf_packed.o >/dev/null 2>&1
> mv -f .deps/cbf_packed.Tpo .deps/cbf_packed.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_predictor.lo -MD -MP -MF .deps/cbf_predictor.Tpo -c -o cbf_predictor.lo cbf_predictor.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_predictor.lo -MD -MP -MF .deps/cbf_predictor.Tpo -c cbf_predictor.c -fPIC -DPIC -o .libs/cbf_predictor.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_predictor.lo -MD -MP -MF .deps/cbf_predictor.Tpo -c cbf_predictor.c -fPIC -DPIC -o cbf_predictor.o >/dev/null 2>&1
> mv -f .deps/cbf_predictor.Tpo .deps/cbf_predictor.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_read_binary.lo -MD -MP -MF .deps/cbf_read_binary.Tpo -c -o cbf_read_binary.lo cbf_read_binary.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_read_binary.lo -MD -MP -MF .deps/cbf_read_binary.Tpo -c cbf_read_binary.c -fPIC -DPIC -o .libs/cbf_read_binary.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_read_binary.lo -MD -MP -MF .deps/cbf_read_binary.Tpo -c cbf_read_binary.c -fPIC -DPIC -o cbf_read_binary.o >/dev/null 2>&1
> mv -f .deps/cbf_read_binary.Tpo .deps/cbf_read_binary.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_read_mime.lo -MD -MP -MF .deps/cbf_read_mime.Tpo -c -o cbf_read_mime.lo cbf_read_mime.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_read_mime.lo -MD -MP -MF .deps/cbf_read_mime.Tpo -c cbf_read_mime.c -fPIC -DPIC -o .libs/cbf_read_mime.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_read_mime.lo -MD -MP -MF .deps/cbf_read_mime.Tpo -c cbf_read_mime.c -fPIC -DPIC -o cbf_read_mime.o >/dev/null 2>&1
> mv -f .deps/cbf_read_mime.Tpo .deps/cbf_read_mime.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_simple.lo -MD -MP -MF .deps/cbf_simple.Tpo -c -o cbf_simple.lo cbf_simple.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_simple.lo -MD -MP -MF .deps/cbf_simple.Tpo -c cbf_simple.c -fPIC -DPIC -o .libs/cbf_simple.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_simple.lo -MD -MP -MF .deps/cbf_simple.Tpo -c cbf_simple.c -fPIC -DPIC -o cbf_simple.o >/dev/null 2>&1
> mv -f .deps/cbf_simple.Tpo .deps/cbf_simple.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_string.lo -MD -MP -MF .deps/cbf_string.Tpo -c -o cbf_string.lo cbf_string.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_string.lo -MD -MP -MF .deps/cbf_string.Tpo -c cbf_string.c -fPIC -DPIC -o .libs/cbf_string.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_string.lo -MD -MP -MF .deps/cbf_string.Tpo -c cbf_string.c -fPIC -DPIC -o cbf_string.o >/dev/null 2>&1
> mv -f .deps/cbf_string.Tpo .deps/cbf_string.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_stx.lo -MD -MP -MF .deps/cbf_stx.Tpo -c -o cbf_stx.lo cbf_stx.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_stx.lo -MD -MP -MF .deps/cbf_stx.Tpo -c cbf_stx.c -fPIC -DPIC -o .libs/cbf_stx.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_stx.lo -MD -MP -MF .deps/cbf_stx.Tpo -c cbf_stx.c -fPIC -DPIC -o cbf_stx.o >/dev/null 2>&1
> mv -f .deps/cbf_stx.Tpo .deps/cbf_stx.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_tree.lo -MD -MP -MF .deps/cbf_tree.Tpo -c -o cbf_tree.lo cbf_tree.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_tree.lo -MD -MP -MF .deps/cbf_tree.Tpo -c cbf_tree.c -fPIC -DPIC -o .libs/cbf_tree.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_tree.lo -MD -MP -MF .deps/cbf_tree.Tpo -c cbf_tree.c -fPIC -DPIC -o cbf_tree.o >/dev/null 2>&1
> mv -f .deps/cbf_tree.Tpo .deps/cbf_tree.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_uncompressed.lo -MD -MP -MF .deps/cbf_uncompressed.Tpo -c -o cbf_uncompressed.lo cbf_uncompressed.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_uncompressed.lo -MD -MP -MF .deps/cbf_uncompressed.Tpo -c cbf_uncompressed.c -fPIC -DPIC -o .libs/cbf_uncompressed.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_uncompressed.lo -MD -MP -MF .deps/cbf_uncompressed.Tpo -c cbf_uncompressed.c -fPIC -DPIC -o cbf_uncompressed.o >/dev/null 2>&1
> mv -f .deps/cbf_uncompressed.Tpo .deps/cbf_uncompressed.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_write.lo -MD -MP -MF .deps/cbf_write.Tpo -c -o cbf_write.lo cbf_write.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_write.lo -MD -MP -MF .deps/cbf_write.Tpo -c cbf_write.c -fPIC -DPIC -o .libs/cbf_write.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_write.lo -MD -MP -MF .deps/cbf_write.Tpo -c cbf_write.c -fPIC -DPIC -o cbf_write.o >/dev/null 2>&1
> mv -f .deps/cbf_write.Tpo .deps/cbf_write.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_write_binary.lo -MD -MP -MF .deps/cbf_write_binary.Tpo -c -o cbf_write_binary.lo cbf_write_binary.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_write_binary.lo -MD -MP -MF .deps/cbf_write_binary.Tpo -c cbf_write_binary.c -fPIC -DPIC -o .libs/cbf_write_binary.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_write_binary.lo -MD -MP -MF .deps/cbf_write_binary.Tpo -c cbf_write_binary.c -fPIC -DPIC -o cbf_write_binary.o >/dev/null 2>&1
> mv -f .deps/cbf_write_binary.Tpo .deps/cbf_write_binary.Plo
> /bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT md5c.lo -MD -MP -MF .deps/md5c.Tpo -c -o md5c.lo md5c.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT md5c.lo -MD -MP -MF .deps/md5c.Tpo -c md5c.c -fPIC -DPIC -o .libs/md5c.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT md5c.lo -MD -MP -MF .deps/md5c.Tpo -c md5c.c -fPIC -DPIC -o md5c.o >/dev/null 2>&1
> mv -f .deps/md5c.Tpo .deps/md5c.Plo
> /bin/sh ../../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I../include -g -O0 -static -o libcbf.la cbf.lo cbf_alloc.lo cbf_ascii.lo cbf_binary.lo cbf_byte_offset.lo cbf_canonical.lo cbf_codes.lo cbf_compress.lo cbf_context.lo cbf_file.lo cbf_lex.lo cbf_packed.lo cbf_predictor.lo cbf_read_binary.lo cbf_read_mime.lo cbf_simple.lo cbf_string.lo cbf_stx.lo cbf_tree.lo cbf_uncompressed.lo cbf_write.lo cbf_write_binary.lo md5c.lo -lm
> ar cru .libs/libcbf.a cbf.o cbf_alloc.o cbf_ascii.o cbf_binary.o cbf_byte_offset.o cbf_canonical.o cbf_codes.o cbf_compress.o cbf_context.o cbf_file.o cbf_lex.o cbf_packed.o cbf_predictor.o cbf_read_binary.o cbf_read_mime.o cbf_simple.o cbf_string.o cbf_stx.o cbf_tree.o cbf_uncompressed.o cbf_write.o cbf_write_binary.o md5c.o
> ranlib .libs/libcbf.a
> creating libcbf.la
> (cd .libs && rm -f libcbf.la && ln -s ../libcbf.la libcbf.la)
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
> make[6]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[6]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[5]: Nothing to be done for `install-exec-am'.
> make[5]: Nothing to be done for `install-data-am'.
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[6]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[6]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[5]: Nothing to be done for `install-exec-am'.
> make[5]: Nothing to be done for `install-data-am'.
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> Making install in Bruker
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> /bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c -o FrmRoutines.lo FrmRoutines.cpp
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c FrmRoutines.cpp -fPIC -DPIC -o .libs/FrmRoutines.o
> FrmRoutines.cpp: In function 'long int* ReadFrameFile(char*, FRM_HEADER*)':
> FrmRoutines.cpp:91: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:97: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:108: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:108: warning: format '%d' expects type 'int', but argument 3 has type 'long int'
> FrmRoutines.cpp:114: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:116: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:132: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:137: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
> FrmRoutines.cpp:137: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
> FrmRoutines.cpp:137: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*'
> FrmRoutines.cpp:139: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
> FrmRoutines.cpp:139: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
> FrmRoutines.cpp:149: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:161: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:173: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:197: warning: format '%-35ld' expects type 'long int', but argument 4 has type 'int'
> FrmRoutines.cpp:199: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FrmRoutines.cpp:215: warning: format '%-35ld' expects type 'long int', but argument 4 has type 'int'
> FrmRoutines.cpp:217: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FrmRoutines.cpp:244: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
> FrmRoutines.cpp:246: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
> FrmRoutines.cpp:246: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
> FrmRoutines.cpp:246: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*'
> FrmRoutines.cpp: In function 'long int SaveFrameFile(char*, FRM_HEADER*, long int*)':
> FrmRoutines.cpp:349: warning: unknown conversion type character 'I' in format
> FrmRoutines.cpp:349: warning: unknown conversion type character 'I' in format
> FrmRoutines.cpp:351: warning: unknown conversion type character 'I' in format
> FrmRoutines.cpp:351: warning: unknown conversion type character 'I' in format
> FrmRoutines.cpp:354: warning: format '%12d' expects type 'int*', but argument 3 has type 'INT64*'
> FrmRoutines.cpp:354: warning: format '%12d' expects type 'int*', but argument 4 has type 'INT64*'
> FrmRoutines.cpp:354: warning: format '%12d' expects type 'int*', but argument 5 has type 'INT64*'
> FrmRoutines.cpp:354: warning: format '%12d' expects type 'int*', but argument 6 has type 'INT64*'
> FrmRoutines.cpp:354: warning: format '%12d' expects type 'int*', but argument 7 has type 'INT64*'
> FrmRoutines.cpp:356: warning: format '%12d' expects type 'int', but argument 3 has type 'INT64'
> FrmRoutines.cpp:356: warning: format '%12d' expects type 'int', but argument 4 has type 'INT64'
> FrmRoutines.cpp:356: warning: format '%12d' expects type 'int', but argument 5 has type 'INT64'
> FrmRoutines.cpp:356: warning: format '%12d' expects type 'int', but argument 6 has type 'INT64'
> FrmRoutines.cpp:356: warning: format '%12d' expects type 'int', but argument 7 has type 'INT64'
> FrmRoutines.cpp: In function 'long int SaveFrameFile_Old(char*, FRM_HEADER*, long int*)':
> FrmRoutines.cpp:448: warning: format '%9d' expects type 'int', but argument 3 has type 'long int'
> FrmRoutines.cpp:448: warning: format '%7d' expects type 'int', but argument 4 has type 'long int'
> FrmRoutines.cpp:457: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FrmRoutines.cpp:461: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FrmRoutines.cpp:482: warning: format '%9d' expects type 'int', but argument 3 has type 'long int'
> FrmRoutines.cpp:482: warning: format '%7d' expects type 'int', but argument 4 has type 'long int'
> FrmRoutines.cpp:491: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FrmRoutines.cpp:495: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FrmRoutines.cpp:501: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FrmRoutines.cpp:505: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FrmRoutines.cpp:522: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
> FrmRoutines.cpp:524: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
> FrmRoutines.cpp:524: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
> FrmRoutines.cpp:524: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*'
> FrmRoutines.cpp:543: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FrmRoutines.cpp:559: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:566: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:578: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:585: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:592: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp: In function 'long int SaveFrameFile_New(char*, FRM_HEADER*, long int*)':
> FrmRoutines.cpp:634: warning: format '%-72ld' expects type 'long int', but argument 3 has type 'int'
> FrmRoutines.cpp:638: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
> FrmRoutines.cpp:638: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
> FrmRoutines.cpp:638: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*'
> FrmRoutines.cpp:873: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:880: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:892: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:900: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:910: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:920: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FrmRoutines.cpp:928: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c FrmRoutines.cpp -fPIC -DPIC -o FrmRoutines.o >/dev/null 2>&1
> mv -f .deps/FrmRoutines.Tpo .deps/FrmRoutines.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c -o FRM_LIB.lo FRM_LIB.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c FRM_LIB.c -fPIC -DPIC -o .libs/FRM_LIB.o
> FRM_LIB.c: In function 'frm_open_file':
> FRM_LIB.c:134: warning: format '%d' expects type 'int *', but argument 3 has type 'long int *'
> FRM_LIB.c: In function 'frm_shrink':
> FRM_LIB.c:589: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:591: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:599: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:599: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
> FRM_LIB.c:599: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
> FRM_LIB.c:599: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
> FRM_LIB.c:599: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
> FRM_LIB.c:599: warning: format '%12d' expects type 'int', but argument 8 has type 'long int'
> FRM_LIB.c:601: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:601: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
> FRM_LIB.c: In function 'frm_convert_header_longs':
> FRM_LIB.c:619: warning: format '%d' expects type 'int *', but argument 3 has type 'long int *'
> FRM_LIB.c:619: warning: format '%d' expects type 'int *', but argument 4 has type 'long int *'
> FRM_LIB.c:619: warning: format '%d' expects type 'int *', but argument 5 has type 'long int *'
> FRM_LIB.c:619: warning: format '%d' expects type 'int *', but argument 6 has type 'long int *'
> FRM_LIB.c:619: warning: format '%d' expects type 'int *', but argument 7 has type 'long int *'
> FRM_LIB.c:619: warning: format '%d' expects type 'int *', but argument 8 has type 'long int *'
> FRM_LIB.c:629: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:639: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:639: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
> FRM_LIB.c:649: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:649: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
> FRM_LIB.c:649: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
> FRM_LIB.c:661: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:661: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
> FRM_LIB.c:661: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
> FRM_LIB.c:661: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
> FRM_LIB.c:673: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:673: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
> FRM_LIB.c:673: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
> FRM_LIB.c:673: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
> FRM_LIB.c:673: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
> FRM_LIB.c:685: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:685: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
> FRM_LIB.c:685: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
> FRM_LIB.c:685: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
> FRM_LIB.c:685: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
> FRM_LIB.c:685: warning: format '%12d' expects type 'int', but argument 8 has type 'long int'
> FRM_LIB.c: In function 'frm_convert_header':
> FRM_LIB.c:797: warning: format '%-72ld' expects type 'long int', but argument 3 has type 'int'
> FRM_LIB.c: In function 'frm_trim':
> FRM_LIB.c:997: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FRM_LIB.c:997: warning: format '%d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:997: warning: format '%d' expects type 'int', but argument 4 has type 'long int'
> FRM_LIB.c:997: warning: format '%d' expects type 'int', but argument 5 has type 'long int'
> FRM_LIB.c:1021: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:1023: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c: In function 'frm_truncate':
> FRM_LIB.c:1082: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
> FRM_LIB.c:1082: warning: format '%d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:1082: warning: format '%d' expects type 'int', but argument 4 has type 'long int'
> FRM_LIB.c:1082: warning: format '%d' expects type 'int', but argument 5 has type 'long int'
> FRM_LIB.c:1106: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:1108: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:1116: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:1116: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
> FRM_LIB.c:1116: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
> FRM_LIB.c:1116: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
> FRM_LIB.c:1116: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
> FRM_LIB.c:1116: warning: format '%12d' expects type 'int', but argument 8 has type 'long int'
> FRM_LIB.c:1118: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:1118: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
> FRM_LIB.c: In function 'frm_reorientate':
> FRM_LIB.c:1302: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:1302: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
> FRM_LIB.c:1302: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
> FRM_LIB.c:1302: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
> FRM_LIB.c:1302: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
> FRM_LIB.c:1302: warning: format '%12d' expects type 'int', but argument 8 has type 'long int'
> FRM_LIB.c:1304: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
> FRM_LIB.c:1304: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c FRM_LIB.c -fPIC -DPIC -o FRM_LIB.o >/dev/null 2>&1
> mv -f .deps/FRM_LIB.Tpo .deps/FRM_LIB.Plo
> /bin/sh ../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -static -o libbruker.la FrmRoutines.lo FRM_LIB.lo -lm
> ar cru .libs/libbruker.a FrmRoutines.o FRM_LIB.o
> ranlib .libs/libbruker.a
> creating libbruker.la
> (cd .libs && rm -f libbruker.la && ln -s ../libbruker.la libbruker.la)
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Nothing to be done for `install-exec-am'.
> make[4]: Nothing to be done for `install-data-am'.
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
> Making install in MAR
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c -o mar300_header.lo mar300_header.c
> mkdir .libs
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c mar300_header.c -fPIC -DPIC -o .libs/mar300_header.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c mar300_header.c -fPIC -DPIC -o mar300_header.o >/dev/null 2>&1
> mv -f .deps/mar300_header.Tpo .deps/mar300_header.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c -o mar345_header.lo mar345_header.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c mar345_header.c -fPIC -DPIC -o .libs/mar345_header.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c mar345_header.c -fPIC -DPIC -o mar345_header.o >/dev/null 2>&1
> mv -f .deps/mar345_header.Tpo .deps/mar345_header.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c -o marcif.lo marcif.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c marcif.c -fPIC -DPIC -o .libs/marcif.o
> marcif.c: In function 'GetCIFData':
> marcif.c:1926: warning: format '%11d' expects type 'int', but argument 2 has type 'size_t'
> marcif.c:1929: warning: format '%11d' expects type 'int', but argument 2 has type 'size_t'
> marcif.c:1932: warning: format '%11d' expects type 'int', but argument 2 has type 'size_t'
> marcif.c: In function 'PutCIFData':
> marcif.c:2007: warning: format '%11d' expects type 'int', but argument 2 has type 'size_t'
> marcif.c:2008: warning: format '%11d' expects type 'int', but argument 2 has type 'size_t'
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c marcif.c -fPIC -DPIC -o marcif.o >/dev/null 2>&1
> mv -f .deps/marcif.Tpo .deps/marcif.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c -o nb_header.lo nb_header.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c nb_header.c -fPIC -DPIC -o .libs/nb_header.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c nb_header.c -fPIC -DPIC -o nb_header.o >/dev/null 2>&1
> mv -f .deps/nb_header.Tpo .deps/nb_header.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c -o swap.lo swap.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -fPIC -DPIC -o .libs/swap.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -fPIC -DPIC -o swap.o >/dev/null 2>&1
> mv -f .deps/swap.Tpo .deps/swap.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c -o utils.lo utils.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c -fPIC -DPIC -o .libs/utils.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c -fPIC -DPIC -o utils.o >/dev/null 2>&1
> mv -f .deps/utils.Tpo .deps/utils.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c -o pck.lo pck.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c pck.c -fPIC -DPIC -o .libs/pck.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c pck.c -fPIC -DPIC -o pck.o >/dev/null 2>&1
> mv -f .deps/pck.Tpo .deps/pck.Plo
> /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -g -O0 -static -o libmar.la mar300_header.lo mar345_header.lo marcif.lo nb_header.lo swap.lo utils.lo pck.lo -lm
> ar cru .libs/libmar.a mar300_header.o mar345_header.o marcif.o nb_header.o swap.o utils.o pck.o
> ranlib .libs/libmar.a
> creating libmar.la
> (cd .libs && rm -f libmar.la && ln -s ../libmar.la libmar.la)
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Nothing to be done for `install-exec-am'.
> make[4]: Nothing to be done for `install-data-am'.
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
> Making install in Rigaku
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> /bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c -o ReadRAXISImages.lo ReadRAXISImages.cpp
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c ReadRAXISImages.cpp -fPIC -DPIC -o .libs/ReadRAXISImages.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c ReadRAXISImages.cpp -fPIC -DPIC -o ReadRAXISImages.o >/dev/null 2>&1
> mv -f .deps/ReadRAXISImages.Tpo .deps/ReadRAXISImages.Plo
> /bin/sh ../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -static -o librigaku.la ReadRAXISImages.lo -lm
> ar cru .libs/librigaku.a ReadRAXISImages.o
> ranlib .libs/librigaku.a
> creating librigaku.la
> (cd .libs && rm -f librigaku.la && ln -s ../librigaku.la librigaku.la)
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Nothing to be done for `install-exec-am'.
> make[4]: Nothing to be done for `install-data-am'.
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
> Making install in jpg
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcapimin.lo -MD -MP -MF .deps/jcapimin.Tpo -c -o jcapimin.lo jcapimin.c
> mkdir .libs
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcapimin.lo -MD -MP -MF .deps/jcapimin.Tpo -c jcapimin.c -fPIC -DPIC -o .libs/jcapimin.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcapimin.lo -MD -MP -MF .deps/jcapimin.Tpo -c jcapimin.c -fPIC -DPIC -o jcapimin.o >/dev/null 2>&1
> mv -f .deps/jcapimin.Tpo .deps/jcapimin.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcapistd.lo -MD -MP -MF .deps/jcapistd.Tpo -c -o jcapistd.lo jcapistd.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcapistd.lo -MD -MP -MF .deps/jcapistd.Tpo -c jcapistd.c -fPIC -DPIC -o .libs/jcapistd.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcapistd.lo -MD -MP -MF .deps/jcapistd.Tpo -c jcapistd.c -fPIC -DPIC -o jcapistd.o >/dev/null 2>&1
> mv -f .deps/jcapistd.Tpo .deps/jcapistd.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jccoefct.lo -MD -MP -MF .deps/jccoefct.Tpo -c -o jccoefct.lo jccoefct.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jccoefct.lo -MD -MP -MF .deps/jccoefct.Tpo -c jccoefct.c -fPIC -DPIC -o .libs/jccoefct.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jccoefct.lo -MD -MP -MF .deps/jccoefct.Tpo -c jccoefct.c -fPIC -DPIC -o jccoefct.o >/dev/null 2>&1
> mv -f .deps/jccoefct.Tpo .deps/jccoefct.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jccolor.lo -MD -MP -MF .deps/jccolor.Tpo -c -o jccolor.lo jccolor.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jccolor.lo -MD -MP -MF .deps/jccolor.Tpo -c jccolor.c -fPIC -DPIC -o .libs/jccolor.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jccolor.lo -MD -MP -MF .deps/jccolor.Tpo -c jccolor.c -fPIC -DPIC -o jccolor.o >/dev/null 2>&1
> mv -f .deps/jccolor.Tpo .deps/jccolor.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcdctmgr.lo -MD -MP -MF .deps/jcdctmgr.Tpo -c -o jcdctmgr.lo jcdctmgr.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcdctmgr.lo -MD -MP -MF .deps/jcdctmgr.Tpo -c jcdctmgr.c -fPIC -DPIC -o .libs/jcdctmgr.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcdctmgr.lo -MD -MP -MF .deps/jcdctmgr.Tpo -c jcdctmgr.c -fPIC -DPIC -o jcdctmgr.o >/dev/null 2>&1
> mv -f .deps/jcdctmgr.Tpo .deps/jcdctmgr.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jchuff.lo -MD -MP -MF .deps/jchuff.Tpo -c -o jchuff.lo jchuff.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jchuff.lo -MD -MP -MF .deps/jchuff.Tpo -c jchuff.c -fPIC -DPIC -o .libs/jchuff.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jchuff.lo -MD -MP -MF .deps/jchuff.Tpo -c jchuff.c -fPIC -DPIC -o jchuff.o >/dev/null 2>&1
> mv -f .deps/jchuff.Tpo .deps/jchuff.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcinit.lo -MD -MP -MF .deps/jcinit.Tpo -c -o jcinit.lo jcinit.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcinit.lo -MD -MP -MF .deps/jcinit.Tpo -c jcinit.c -fPIC -DPIC -o .libs/jcinit.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcinit.lo -MD -MP -MF .deps/jcinit.Tpo -c jcinit.c -fPIC -DPIC -o jcinit.o >/dev/null 2>&1
> mv -f .deps/jcinit.Tpo .deps/jcinit.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmainct.lo -MD -MP -MF .deps/jcmainct.Tpo -c -o jcmainct.lo jcmainct.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmainct.lo -MD -MP -MF .deps/jcmainct.Tpo -c jcmainct.c -fPIC -DPIC -o .libs/jcmainct.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmainct.lo -MD -MP -MF .deps/jcmainct.Tpo -c jcmainct.c -fPIC -DPIC -o jcmainct.o >/dev/null 2>&1
> mv -f .deps/jcmainct.Tpo .deps/jcmainct.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmarker.lo -MD -MP -MF .deps/jcmarker.Tpo -c -o jcmarker.lo jcmarker.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmarker.lo -MD -MP -MF .deps/jcmarker.Tpo -c jcmarker.c -fPIC -DPIC -o .libs/jcmarker.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmarker.lo -MD -MP -MF .deps/jcmarker.Tpo -c jcmarker.c -fPIC -DPIC -o jcmarker.o >/dev/null 2>&1
> mv -f .deps/jcmarker.Tpo .deps/jcmarker.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmaster.lo -MD -MP -MF .deps/jcmaster.Tpo -c -o jcmaster.lo jcmaster.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmaster.lo -MD -MP -MF .deps/jcmaster.Tpo -c jcmaster.c -fPIC -DPIC -o .libs/jcmaster.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmaster.lo -MD -MP -MF .deps/jcmaster.Tpo -c jcmaster.c -fPIC -DPIC -o jcmaster.o >/dev/null 2>&1
> mv -f .deps/jcmaster.Tpo .deps/jcmaster.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcomapi.lo -MD -MP -MF .deps/jcomapi.Tpo -c -o jcomapi.lo jcomapi.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcomapi.lo -MD -MP -MF .deps/jcomapi.Tpo -c jcomapi.c -fPIC -DPIC -o .libs/jcomapi.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcomapi.lo -MD -MP -MF .deps/jcomapi.Tpo -c jcomapi.c -fPIC -DPIC -o jcomapi.o >/dev/null 2>&1
> mv -f .deps/jcomapi.Tpo .deps/jcomapi.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcparam.lo -MD -MP -MF .deps/jcparam.Tpo -c -o jcparam.lo jcparam.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcparam.lo -MD -MP -MF .deps/jcparam.Tpo -c jcparam.c -fPIC -DPIC -o .libs/jcparam.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcparam.lo -MD -MP -MF .deps/jcparam.Tpo -c jcparam.c -fPIC -DPIC -o jcparam.o >/dev/null 2>&1
> mv -f .deps/jcparam.Tpo .deps/jcparam.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcphuff.lo -MD -MP -MF .deps/jcphuff.Tpo -c -o jcphuff.lo jcphuff.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcphuff.lo -MD -MP -MF .deps/jcphuff.Tpo -c jcphuff.c -fPIC -DPIC -o .libs/jcphuff.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcphuff.lo -MD -MP -MF .deps/jcphuff.Tpo -c jcphuff.c -fPIC -DPIC -o jcphuff.o >/dev/null 2>&1
> mv -f .deps/jcphuff.Tpo .deps/jcphuff.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcprepct.lo -MD -MP -MF .deps/jcprepct.Tpo -c -o jcprepct.lo jcprepct.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcprepct.lo -MD -MP -MF .deps/jcprepct.Tpo -c jcprepct.c -fPIC -DPIC -o .libs/jcprepct.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcprepct.lo -MD -MP -MF .deps/jcprepct.Tpo -c jcprepct.c -fPIC -DPIC -o jcprepct.o >/dev/null 2>&1
> mv -f .deps/jcprepct.Tpo .deps/jcprepct.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcsample.lo -MD -MP -MF .deps/jcsample.Tpo -c -o jcsample.lo jcsample.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcsample.lo -MD -MP -MF .deps/jcsample.Tpo -c jcsample.c -fPIC -DPIC -o .libs/jcsample.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcsample.lo -MD -MP -MF .deps/jcsample.Tpo -c jcsample.c -fPIC -DPIC -o jcsample.o >/dev/null 2>&1
> mv -f .deps/jcsample.Tpo .deps/jcsample.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jctrans.lo -MD -MP -MF .deps/jctrans.Tpo -c -o jctrans.lo jctrans.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jctrans.lo -MD -MP -MF .deps/jctrans.Tpo -c jctrans.c -fPIC -DPIC -o .libs/jctrans.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jctrans.lo -MD -MP -MF .deps/jctrans.Tpo -c jctrans.c -fPIC -DPIC -o jctrans.o >/dev/null 2>&1
> mv -f .deps/jctrans.Tpo .deps/jctrans.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdapimin.lo -MD -MP -MF .deps/jdapimin.Tpo -c -o jdapimin.lo jdapimin.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdapimin.lo -MD -MP -MF .deps/jdapimin.Tpo -c jdapimin.c -fPIC -DPIC -o .libs/jdapimin.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdapimin.lo -MD -MP -MF .deps/jdapimin.Tpo -c jdapimin.c -fPIC -DPIC -o jdapimin.o >/dev/null 2>&1
> mv -f .deps/jdapimin.Tpo .deps/jdapimin.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdapistd.lo -MD -MP -MF .deps/jdapistd.Tpo -c -o jdapistd.lo jdapistd.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdapistd.lo -MD -MP -MF .deps/jdapistd.Tpo -c jdapistd.c -fPIC -DPIC -o .libs/jdapistd.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdapistd.lo -MD -MP -MF .deps/jdapistd.Tpo -c jdapistd.c -fPIC -DPIC -o jdapistd.o >/dev/null 2>&1
> mv -f .deps/jdapistd.Tpo .deps/jdapistd.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdatadst.lo -MD -MP -MF .deps/jdatadst.Tpo -c -o jdatadst.lo jdatadst.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdatadst.lo -MD -MP -MF .deps/jdatadst.Tpo -c jdatadst.c -fPIC -DPIC -o .libs/jdatadst.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdatadst.lo -MD -MP -MF .deps/jdatadst.Tpo -c jdatadst.c -fPIC -DPIC -o jdatadst.o >/dev/null 2>&1
> mv -f .deps/jdatadst.Tpo .deps/jdatadst.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdatasrc.lo -MD -MP -MF .deps/jdatasrc.Tpo -c -o jdatasrc.lo jdatasrc.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdatasrc.lo -MD -MP -MF .deps/jdatasrc.Tpo -c jdatasrc.c -fPIC -DPIC -o .libs/jdatasrc.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdatasrc.lo -MD -MP -MF .deps/jdatasrc.Tpo -c jdatasrc.c -fPIC -DPIC -o jdatasrc.o >/dev/null 2>&1
> mv -f .deps/jdatasrc.Tpo .deps/jdatasrc.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdcoefct.lo -MD -MP -MF .deps/jdcoefct.Tpo -c -o jdcoefct.lo jdcoefct.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdcoefct.lo -MD -MP -MF .deps/jdcoefct.Tpo -c jdcoefct.c -fPIC -DPIC -o .libs/jdcoefct.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdcoefct.lo -MD -MP -MF .deps/jdcoefct.Tpo -c jdcoefct.c -fPIC -DPIC -o jdcoefct.o >/dev/null 2>&1
> mv -f .deps/jdcoefct.Tpo .deps/jdcoefct.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdcolor.lo -MD -MP -MF .deps/jdcolor.Tpo -c -o jdcolor.lo jdcolor.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdcolor.lo -MD -MP -MF .deps/jdcolor.Tpo -c jdcolor.c -fPIC -DPIC -o .libs/jdcolor.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdcolor.lo -MD -MP -MF .deps/jdcolor.Tpo -c jdcolor.c -fPIC -DPIC -o jdcolor.o >/dev/null 2>&1
> mv -f .deps/jdcolor.Tpo .deps/jdcolor.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jddctmgr.lo -MD -MP -MF .deps/jddctmgr.Tpo -c -o jddctmgr.lo jddctmgr.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jddctmgr.lo -MD -MP -MF .deps/jddctmgr.Tpo -c jddctmgr.c -fPIC -DPIC -o .libs/jddctmgr.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jddctmgr.lo -MD -MP -MF .deps/jddctmgr.Tpo -c jddctmgr.c -fPIC -DPIC -o jddctmgr.o >/dev/null 2>&1
> mv -f .deps/jddctmgr.Tpo .deps/jddctmgr.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdhuff.lo -MD -MP -MF .deps/jdhuff.Tpo -c -o jdhuff.lo jdhuff.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdhuff.lo -MD -MP -MF .deps/jdhuff.Tpo -c jdhuff.c -fPIC -DPIC -o .libs/jdhuff.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdhuff.lo -MD -MP -MF .deps/jdhuff.Tpo -c jdhuff.c -fPIC -DPIC -o jdhuff.o >/dev/null 2>&1
> mv -f .deps/jdhuff.Tpo .deps/jdhuff.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdinput.lo -MD -MP -MF .deps/jdinput.Tpo -c -o jdinput.lo jdinput.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdinput.lo -MD -MP -MF .deps/jdinput.Tpo -c jdinput.c -fPIC -DPIC -o .libs/jdinput.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdinput.lo -MD -MP -MF .deps/jdinput.Tpo -c jdinput.c -fPIC -DPIC -o jdinput.o >/dev/null 2>&1
> mv -f .deps/jdinput.Tpo .deps/jdinput.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmainct.lo -MD -MP -MF .deps/jdmainct.Tpo -c -o jdmainct.lo jdmainct.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmainct.lo -MD -MP -MF .deps/jdmainct.Tpo -c jdmainct.c -fPIC -DPIC -o .libs/jdmainct.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmainct.lo -MD -MP -MF .deps/jdmainct.Tpo -c jdmainct.c -fPIC -DPIC -o jdmainct.o >/dev/null 2>&1
> mv -f .deps/jdmainct.Tpo .deps/jdmainct.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmarker.lo -MD -MP -MF .deps/jdmarker.Tpo -c -o jdmarker.lo jdmarker.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmarker.lo -MD -MP -MF .deps/jdmarker.Tpo -c jdmarker.c -fPIC -DPIC -o .libs/jdmarker.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmarker.lo -MD -MP -MF .deps/jdmarker.Tpo -c jdmarker.c -fPIC -DPIC -o jdmarker.o >/dev/null 2>&1
> mv -f .deps/jdmarker.Tpo .deps/jdmarker.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmaster.lo -MD -MP -MF .deps/jdmaster.Tpo -c -o jdmaster.lo jdmaster.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmaster.lo -MD -MP -MF .deps/jdmaster.Tpo -c jdmaster.c -fPIC -DPIC -o .libs/jdmaster.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmaster.lo -MD -MP -MF .deps/jdmaster.Tpo -c jdmaster.c -fPIC -DPIC -o jdmaster.o >/dev/null 2>&1
> mv -f .deps/jdmaster.Tpo .deps/jdmaster.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmerge.lo -MD -MP -MF .deps/jdmerge.Tpo -c -o jdmerge.lo jdmerge.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmerge.lo -MD -MP -MF .deps/jdmerge.Tpo -c jdmerge.c -fPIC -DPIC -o .libs/jdmerge.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmerge.lo -MD -MP -MF .deps/jdmerge.Tpo -c jdmerge.c -fPIC -DPIC -o jdmerge.o >/dev/null 2>&1
> mv -f .deps/jdmerge.Tpo .deps/jdmerge.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdphuff.lo -MD -MP -MF .deps/jdphuff.Tpo -c -o jdphuff.lo jdphuff.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdphuff.lo -MD -MP -MF .deps/jdphuff.Tpo -c jdphuff.c -fPIC -DPIC -o .libs/jdphuff.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdphuff.lo -MD -MP -MF .deps/jdphuff.Tpo -c jdphuff.c -fPIC -DPIC -o jdphuff.o >/dev/null 2>&1
> mv -f .deps/jdphuff.Tpo .deps/jdphuff.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdpostct.lo -MD -MP -MF .deps/jdpostct.Tpo -c -o jdpostct.lo jdpostct.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdpostct.lo -MD -MP -MF .deps/jdpostct.Tpo -c jdpostct.c -fPIC -DPIC -o .libs/jdpostct.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdpostct.lo -MD -MP -MF .deps/jdpostct.Tpo -c jdpostct.c -fPIC -DPIC -o jdpostct.o >/dev/null 2>&1
> mv -f .deps/jdpostct.Tpo .deps/jdpostct.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdsample.lo -MD -MP -MF .deps/jdsample.Tpo -c -o jdsample.lo jdsample.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdsample.lo -MD -MP -MF .deps/jdsample.Tpo -c jdsample.c -fPIC -DPIC -o .libs/jdsample.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdsample.lo -MD -MP -MF .deps/jdsample.Tpo -c jdsample.c -fPIC -DPIC -o jdsample.o >/dev/null 2>&1
> mv -f .deps/jdsample.Tpo .deps/jdsample.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdtrans.lo -MD -MP -MF .deps/jdtrans.Tpo -c -o jdtrans.lo jdtrans.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdtrans.lo -MD -MP -MF .deps/jdtrans.Tpo -c jdtrans.c -fPIC -DPIC -o .libs/jdtrans.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdtrans.lo -MD -MP -MF .deps/jdtrans.Tpo -c jdtrans.c -fPIC -DPIC -o jdtrans.o >/dev/null 2>&1
> mv -f .deps/jdtrans.Tpo .deps/jdtrans.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jerror.lo -MD -MP -MF .deps/jerror.Tpo -c -o jerror.lo jerror.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jerror.lo -MD -MP -MF .deps/jerror.Tpo -c jerror.c -fPIC -DPIC -o .libs/jerror.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jerror.lo -MD -MP -MF .deps/jerror.Tpo -c jerror.c -fPIC -DPIC -o jerror.o >/dev/null 2>&1
> mv -f .deps/jerror.Tpo .deps/jerror.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctflt.lo -MD -MP -MF .deps/jfdctflt.Tpo -c -o jfdctflt.lo jfdctflt.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctflt.lo -MD -MP -MF .deps/jfdctflt.Tpo -c jfdctflt.c -fPIC -DPIC -o .libs/jfdctflt.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctflt.lo -MD -MP -MF .deps/jfdctflt.Tpo -c jfdctflt.c -fPIC -DPIC -o jfdctflt.o >/dev/null 2>&1
> mv -f .deps/jfdctflt.Tpo .deps/jfdctflt.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctfst.lo -MD -MP -MF .deps/jfdctfst.Tpo -c -o jfdctfst.lo jfdctfst.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctfst.lo -MD -MP -MF .deps/jfdctfst.Tpo -c jfdctfst.c -fPIC -DPIC -o .libs/jfdctfst.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctfst.lo -MD -MP -MF .deps/jfdctfst.Tpo -c jfdctfst.c -fPIC -DPIC -o jfdctfst.o >/dev/null 2>&1
> mv -f .deps/jfdctfst.Tpo .deps/jfdctfst.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctint.lo -MD -MP -MF .deps/jfdctint.Tpo -c -o jfdctint.lo jfdctint.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctint.lo -MD -MP -MF .deps/jfdctint.Tpo -c jfdctint.c -fPIC -DPIC -o .libs/jfdctint.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctint.lo -MD -MP -MF .deps/jfdctint.Tpo -c jfdctint.c -fPIC -DPIC -o jfdctint.o >/dev/null 2>&1
> mv -f .deps/jfdctint.Tpo .deps/jfdctint.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctflt.lo -MD -MP -MF .deps/jidctflt.Tpo -c -o jidctflt.lo jidctflt.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctflt.lo -MD -MP -MF .deps/jidctflt.Tpo -c jidctflt.c -fPIC -DPIC -o .libs/jidctflt.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctflt.lo -MD -MP -MF .deps/jidctflt.Tpo -c jidctflt.c -fPIC -DPIC -o jidctflt.o >/dev/null 2>&1
> mv -f .deps/jidctflt.Tpo .deps/jidctflt.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctfst.lo -MD -MP -MF .deps/jidctfst.Tpo -c -o jidctfst.lo jidctfst.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctfst.lo -MD -MP -MF .deps/jidctfst.Tpo -c jidctfst.c -fPIC -DPIC -o .libs/jidctfst.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctfst.lo -MD -MP -MF .deps/jidctfst.Tpo -c jidctfst.c -fPIC -DPIC -o jidctfst.o >/dev/null 2>&1
> mv -f .deps/jidctfst.Tpo .deps/jidctfst.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctint.lo -MD -MP -MF .deps/jidctint.Tpo -c -o jidctint.lo jidctint.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctint.lo -MD -MP -MF .deps/jidctint.Tpo -c jidctint.c -fPIC -DPIC -o .libs/jidctint.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctint.lo -MD -MP -MF .deps/jidctint.Tpo -c jidctint.c -fPIC -DPIC -o jidctint.o >/dev/null 2>&1
> mv -f .deps/jidctint.Tpo .deps/jidctint.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctred.lo -MD -MP -MF .deps/jidctred.Tpo -c -o jidctred.lo jidctred.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctred.lo -MD -MP -MF .deps/jidctred.Tpo -c jidctred.c -fPIC -DPIC -o .libs/jidctred.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctred.lo -MD -MP -MF .deps/jidctred.Tpo -c jidctred.c -fPIC -DPIC -o jidctred.o >/dev/null 2>&1
> mv -f .deps/jidctred.Tpo .deps/jidctred.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jquant1.lo -MD -MP -MF .deps/jquant1.Tpo -c -o jquant1.lo jquant1.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jquant1.lo -MD -MP -MF .deps/jquant1.Tpo -c jquant1.c -fPIC -DPIC -o .libs/jquant1.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jquant1.lo -MD -MP -MF .deps/jquant1.Tpo -c jquant1.c -fPIC -DPIC -o jquant1.o >/dev/null 2>&1
> mv -f .deps/jquant1.Tpo .deps/jquant1.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jquant2.lo -MD -MP -MF .deps/jquant2.Tpo -c -o jquant2.lo jquant2.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jquant2.lo -MD -MP -MF .deps/jquant2.Tpo -c jquant2.c -fPIC -DPIC -o .libs/jquant2.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jquant2.lo -MD -MP -MF .deps/jquant2.Tpo -c jquant2.c -fPIC -DPIC -o jquant2.o >/dev/null 2>&1
> mv -f .deps/jquant2.Tpo .deps/jquant2.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jutils.lo -MD -MP -MF .deps/jutils.Tpo -c -o jutils.lo jutils.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jutils.lo -MD -MP -MF .deps/jutils.Tpo -c jutils.c -fPIC -DPIC -o .libs/jutils.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jutils.lo -MD -MP -MF .deps/jutils.Tpo -c jutils.c -fPIC -DPIC -o jutils.o >/dev/null 2>&1
> mv -f .deps/jutils.Tpo .deps/jutils.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jmemmgr.lo -MD -MP -MF .deps/jmemmgr.Tpo -c -o jmemmgr.lo jmemmgr.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jmemmgr.lo -MD -MP -MF .deps/jmemmgr.Tpo -c jmemmgr.c -fPIC -DPIC -o .libs/jmemmgr.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jmemmgr.lo -MD -MP -MF .deps/jmemmgr.Tpo -c jmemmgr.c -fPIC -DPIC -o jmemmgr.o >/dev/null 2>&1
> mv -f .deps/jmemmgr.Tpo .deps/jmemmgr.Plo
> /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jmemnobs.lo -MD -MP -MF .deps/jmemnobs.Tpo -c -o jmemnobs.lo jmemnobs.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jmemnobs.lo -MD -MP -MF .deps/jmemnobs.Tpo -c jmemnobs.c -fPIC -DPIC -o .libs/jmemnobs.o
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jmemnobs.lo -MD -MP -MF .deps/jmemnobs.Tpo -c jmemnobs.c -fPIC -DPIC -o jmemnobs.o >/dev/null 2>&1
> mv -f .deps/jmemnobs.Tpo .deps/jmemnobs.Plo
> /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -version-info 62:0 -o libjpeg.la jcapimin.lo jcapistd.lo jccoefct.lo jccolor.lo jcdctmgr.lo jchuff.lo jcinit.lo jcmainct.lo jcmarker.lo jcmaster.lo jcomapi.lo jcparam.lo jcphuff.lo jcprepct.lo jcsample.lo jctrans.lo jdapimin.lo jdapistd.lo jdatadst.lo jdatasrc.lo jdcoefct.lo jdcolor.lo jddctmgr.lo jdhuff.lo jdinput.lo jdmainct.lo jdmarker.lo jdmaster.lo jdmerge.lo jdphuff.lo jdpostct.lo jdsample.lo jdtrans.lo jerror.lo jfdctflt.lo jfdctfst.lo jfdctint.lo jidctflt.lo jidctfst.lo jidctint.lo jidctred.lo jquant1.lo jquant2.lo jutils.lo jmemmgr.lo jmemnobs.lo -lm
> libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
> ar cru .libs/libjpeg.a .libs/jcapimin.o .libs/jcapistd.o .libs/jccoefct.o .libs/jccolor.o .libs/jcdctmgr.o .libs/jchuff.o .libs/jcinit.o .libs/jcmainct.o .libs/jcmarker.o .libs/jcmaster.o .libs/jcomapi.o .libs/jcparam.o .libs/jcphuff.o .libs/jcprepct.o .libs/jcsample.o .libs/jctrans.o .libs/jdapimin.o .libs/jdapistd.o .libs/jdatadst.o .libs/jdatasrc.o .libs/jdcoefct.o .libs/jdcolor.o .libs/jddctmgr.o .libs/jdhuff.o .libs/jdinput.o .libs/jdmainct.o .libs/jdmarker.o .libs/jdmaster.o .libs/jdmerge.o .libs/jdphuff.o .libs/jdpostct.o .libs/jdsample.o .libs/jdtrans.o .libs/jerror.o .libs/jfdctflt.o .libs/jfdctfst.o .libs/jfdctint.o .libs/jidctflt.o .libs/jidctfst.o .libs/jidctint.o .libs/jidctred.o .libs/jquant1.o .libs/jquant2.o .libs/jutils.o .libs/jmemmgr.o .libs/jmemnobs.o
> ranlib .libs/libjpeg.a
> creating libjpeg.la
> (cd .libs && rm -f libjpeg.la && ln -s ../libjpeg.la libjpeg.la)
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Nothing to be done for `install-exec-am'.
> make[4]: Nothing to be done for `install-data-am'.
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c -o DiffractionImageJpeg.lo DiffractionImageJpeg.cpp
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c DiffractionImageJpeg.cpp -fPIC -DPIC -o .libs/DiffractionImageJpeg.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c DiffractionImageJpeg.cpp -fPIC -DPIC -o DiffractionImageJpeg.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageJpeg.Tpo .deps/DiffractionImageJpeg.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c -o DiffractionImageADSC.lo DiffractionImageADSC.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c DiffractionImageADSC.cpp -fPIC -DPIC -o .libs/DiffractionImageADSC.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c DiffractionImageADSC.cpp -fPIC -DPIC -o DiffractionImageADSC.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageADSC.Tpo .deps/DiffractionImageADSC.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c -o DiffractionImageCBF.lo DiffractionImageCBF.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c DiffractionImageCBF.cpp -fPIC -DPIC -o .libs/DiffractionImageCBF.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c DiffractionImageCBF.cpp -fPIC -DPIC -o DiffractionImageCBF.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageCBF.Tpo .deps/DiffractionImageCBF.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c -o DiffractionImageMAR.lo DiffractionImageMAR.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c DiffractionImageMAR.cpp -fPIC -DPIC -o .libs/DiffractionImageMAR.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c DiffractionImageMAR.cpp -fPIC -DPIC -o DiffractionImageMAR.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageMAR.Tpo .deps/DiffractionImageMAR.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRAXIS.lo -MD -MP -MF .deps/DiffractionImageRAXIS.Tpo -c -o DiffractionImageRAXIS.lo DiffractionImageRAXIS.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRAXIS.lo -MD -MP -MF .deps/DiffractionImageRAXIS.Tpo -c DiffractionImageRAXIS.cpp -fPIC -DPIC -o .libs/DiffractionImageRAXIS.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRAXIS.lo -MD -MP -MF .deps/DiffractionImageRAXIS.Tpo -c DiffractionImageRAXIS.cpp -fPIC -DPIC -o DiffractionImageRAXIS.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageRAXIS.Tpo .deps/DiffractionImageRAXIS.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c -o DiffractionImageRaxisDtrek.lo DiffractionImageRaxisDtrek.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c DiffractionImageRaxisDtrek.cpp -fPIC -DPIC -o .libs/DiffractionImageRaxisDtrek.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c DiffractionImageRaxisDtrek.cpp -fPIC -DPIC -o DiffractionImageRaxisDtrek.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageRaxisDtrek.Tpo .deps/DiffractionImageRaxisDtrek.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c -o DiffractionImageSaturn.lo DiffractionImageSaturn.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c DiffractionImageSaturn.cpp -fPIC -DPIC -o .libs/DiffractionImageSaturn.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c DiffractionImageSaturn.cpp -fPIC -DPIC -o DiffractionImageSaturn.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageSaturn.Tpo .deps/DiffractionImageSaturn.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c -o DiffractionImageBruker.lo DiffractionImageBruker.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c DiffractionImageBruker.cpp -fPIC -DPIC -o .libs/DiffractionImageBruker.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c DiffractionImageBruker.cpp -fPIC -DPIC -o DiffractionImageBruker.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageBruker.Tpo .deps/DiffractionImageBruker.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c -o DiffractionImageOxford.lo DiffractionImageOxford.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c DiffractionImageOxford.cpp -fPIC -DPIC -o .libs/DiffractionImageOxford.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c DiffractionImageOxford.cpp -fPIC -DPIC -o DiffractionImageOxford.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageOxford.Tpo .deps/DiffractionImageOxford.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageTiff.lo -MD -MP -MF .deps/DiffractionImageTiff.Tpo -c -o DiffractionImageTiff.lo DiffractionImageTiff.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageTiff.lo -MD -MP -MF .deps/DiffractionImageTiff.Tpo -c DiffractionImageTiff.cpp -fPIC -DPIC -o .libs/DiffractionImageTiff.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageTiff.lo -MD -MP -MF .deps/DiffractionImageTiff.Tpo -c DiffractionImageTiff.cpp -fPIC -DPIC -o DiffractionImageTiff.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageTiff.Tpo .deps/DiffractionImageTiff.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c -o DiffractionImage.lo DiffractionImage.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c DiffractionImage.cpp -fPIC -DPIC -o .libs/DiffractionImage.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c DiffractionImage.cpp -fPIC -DPIC -o DiffractionImage.o >/dev/null 2>&1
> mv -f .deps/DiffractionImage.Tpo .deps/DiffractionImage.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c -o DiffractionImageRaw.lo DiffractionImageRaw.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c DiffractionImageRaw.cpp -fPIC -DPIC -o .libs/DiffractionImageRaw.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c DiffractionImageRaw.cpp -fPIC -DPIC -o DiffractionImageRaw.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageRaw.Tpo .deps/DiffractionImageRaw.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c -o DiffractionImageUtility.lo DiffractionImageUtility.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c DiffractionImageUtility.cpp -fPIC -DPIC -o .libs/DiffractionImageUtility.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c DiffractionImageUtility.cpp -fPIC -DPIC -o DiffractionImageUtility.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageUtility.Tpo .deps/DiffractionImageUtility.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c -o DiffractionImageCalculations.lo DiffractionImageCalculations.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c DiffractionImageCalculations.cpp -fPIC -DPIC -o .libs/DiffractionImageCalculations.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c DiffractionImageCalculations.cpp -fPIC -DPIC -o DiffractionImageCalculations.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageCalculations.Tpo .deps/DiffractionImageCalculations.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c -o DiffractionImageImgOperations.lo DiffractionImageImgOperations.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c DiffractionImageImgOperations.cpp -fPIC -DPIC -o .libs/DiffractionImageImgOperations.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c DiffractionImageImgOperations.cpp -fPIC -DPIC -o DiffractionImageImgOperations.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageImgOperations.Tpo .deps/DiffractionImageImgOperations.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageException.lo -MD -MP -MF .deps/DiffractionImageException.Tpo -c -o DiffractionImageException.lo DiffractionImageException.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageException.lo -MD -MP -MF .deps/DiffractionImageException.Tpo -c DiffractionImageException.cpp -fPIC -DPIC -o .libs/DiffractionImageException.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageException.lo -MD -MP -MF .deps/DiffractionImageException.Tpo -c DiffractionImageException.cpp -fPIC -DPIC -o DiffractionImageException.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageException.Tpo .deps/DiffractionImageException.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c -o DiffractionImageCompare.lo DiffractionImageCompare.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c DiffractionImageCompare.cpp -fPIC -DPIC -o .libs/DiffractionImageCompare.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c DiffractionImageCompare.cpp -fPIC -DPIC -o DiffractionImageCompare.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageCompare.Tpo .deps/DiffractionImageCompare.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c -o DiffractionImageAutomask.lo DiffractionImageAutomask.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c DiffractionImageAutomask.cpp -fPIC -DPIC -o .libs/DiffractionImageAutomask.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c DiffractionImageAutomask.cpp -fPIC -DPIC -o DiffractionImageAutomask.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageAutomask.Tpo .deps/DiffractionImageAutomask.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c -o Profile.lo Profile.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c Profile.cpp -fPIC -DPIC -o .libs/Profile.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c Profile.cpp -fPIC -DPIC -o Profile.o >/dev/null 2>&1
> mv -f .deps/Profile.Tpo .deps/Profile.Plo
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c -o Peak.lo Peak.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c Peak.cpp -fPIC -DPIC -o .libs/Peak.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c Peak.cpp -fPIC -DPIC -o Peak.o >/dev/null 2>&1
> mv -f .deps/Peak.Tpo .deps/Peak.Plo
> /bin/sh ./libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c -o dps_peaksearch_cn.lo dps_peaksearch_cn.c
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c dps_peaksearch_cn.c -fPIC -DPIC -o .libs/dps_peaksearch_cn.o
> dps_peaksearch_cn.c: In function 'dps_peaksearch_cn':
> dps_peaksearch_cn.c:403: warning: passing argument 4 of 'qsort' from incompatible pointer type
> x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c dps_peaksearch_cn.c -fPIC -DPIC -o dps_peaksearch_cn.o >/dev/null 2>&1
> mv -f .deps/dps_peaksearch_cn.Tpo .deps/dps_peaksearch_cn.Plo
> /bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -static -o libDiffImage.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib DiffractionImageJpeg.lo DiffractionImageADSC.lo DiffractionImageCBF.lo DiffractionImageMAR.lo DiffractionImageRAXIS.lo DiffractionImageRaxisDtrek.lo DiffractionImageSaturn.lo DiffractionImageBruker.lo DiffractionImageOxford.lo DiffractionImageTiff.lo DiffractionImage.lo DiffractionImageRaw.lo DiffractionImageUtility.lo DiffractionImageCalculations.lo DiffractionImageImgOperations.lo DiffractionImageException.lo DiffractionImageCompare.lo DiffractionImageAutomask.lo Profile.lo Peak.lo dps_peaksearch_cn.lo -lm
> ar cru .libs/libDiffImage.a DiffractionImageJpeg.o DiffractionImageADSC.o DiffractionImageCBF.o DiffractionImageMAR.o DiffractionImageRAXIS.o DiffractionImageRaxisDtrek.o DiffractionImageSaturn.o DiffractionImageBruker.o DiffractionImageOxford.o DiffractionImageTiff.o DiffractionImage.o DiffractionImageRaw.o DiffractionImageUtility.o DiffractionImageCalculations.o DiffractionImageImgOperations.o DiffractionImageException.o DiffractionImageCompare.o DiffractionImageAutomask.o Profile.o Peak.o dps_peaksearch_cn.o
> ranlib .libs/libDiffImage.a
> creating libDiffImage.la
> (cd .libs && rm -f libDiffImage.la && ln -s ../libDiffImage.la libDiffImage.la)
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c -o DiffractionImagePythonInterface.lo DiffractionImagePythonInterface.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c DiffractionImagePythonInterface.cpp -fPIC -DPIC -o .libs/DiffractionImagePythonInterface.o
> DiffractionImagePythonInterface.cpp: In function 'void SWIG_Python_AddErrorMsg(const char*)':
> DiffractionImagePythonInterface.cpp:870: warning: format not a string literal and no format arguments
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c DiffractionImagePythonInterface.cpp -fPIC -DPIC -o DiffractionImagePythonInterface.o >/dev/null 2>&1
> mv -f .deps/DiffractionImagePythonInterface.Tpo .deps/DiffractionImagePythonInterface.Plo
> /bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -shared --whole-archive libDiffImage.la ./CBFlib/src/libcbf.la ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la --no-whole-archive -rpath '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib' -o lib_DiffractionImage.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib DiffractionImagePythonInterface.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/DiffractionImagePythonInterface.o -Wl,--whole-archive ./CBFlib/src/.libs/libcbf.a ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -Wl,--no-whole-archive ./.libs/libDiffImage.a -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -Wl,-soname -Wl,lib_DiffractionImage.so.0 -o .libs/lib_DiffractionImage.so.0.0.0
> (cd .libs && rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0)
> (cd .libs && rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so)
> rm -fr .libs/lib_DiffractionImage.lax
> mkdir .libs/lib_DiffractionImage.lax
> rm -fr .libs/lib_DiffractionImage.lax/libcbf.a
> mkdir .libs/lib_DiffractionImage.lax/libcbf.a
> (cd .libs/lib_DiffractionImage.lax/libcbf.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./CBFlib/src/.libs/libcbf.a)
> rm -fr .libs/lib_DiffractionImage.lax/libbruker.a
> mkdir .libs/lib_DiffractionImage.lax/libbruker.a
> (cd .libs/lib_DiffractionImage.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./Bruker/.libs/libbruker.a)
> rm -fr .libs/lib_DiffractionImage.lax/libmar.a
> mkdir .libs/lib_DiffractionImage.lax/libmar.a
> (cd .libs/lib_DiffractionImage.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./MAR/.libs/libmar.a)
> rm -fr .libs/lib_DiffractionImage.lax/librigaku.a
> mkdir .libs/lib_DiffractionImage.lax/librigaku.a
> (cd .libs/lib_DiffractionImage.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./Rigaku/.libs/librigaku.a)
> rm -fr .libs/lib_DiffractionImage.lax/libjpeg.a
> mkdir .libs/lib_DiffractionImage.lax/libjpeg.a
> (cd .libs/lib_DiffractionImage.lax/libjpeg.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./jpg/.libs/libjpeg.a)
> ar cru .libs/lib_DiffractionImage.a DiffractionImagePythonInterface.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_alloc.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_ascii.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_binary.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_byte_offset.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_canonical.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_codes.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_compress.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_context.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_file.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_lex.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_packed.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_predictor.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_read_binary.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_read_mime.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_simple.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_string.o .libs/l!
ib_DiffractionImage.lax/libcbf.a/cbf_stx.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_tree.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_uncompressed.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_write.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_write_binary.o .libs/lib_DiffractionImage.lax/libcbf.a/md5c.o .libs/lib_DiffractionImage.lax/libbruker.a/FrmRoutines.o .libs/lib_DiffractionImage.lax/libbruker.a/FRM_LIB.o .libs/lib_DiffractionImage.lax/libmar.a/mar300_header.o .libs/lib_DiffractionImage.lax/libmar.a/mar345_header.o .libs/lib_DiffractionImage.lax/libmar.a/marcif.o .libs/lib_DiffractionImage.lax/libmar.a/nb_header.o .libs/lib_DiffractionImage.lax/libmar.a/swap.o .libs/lib_DiffractionImage.lax/libmar.a/utils.o .libs/lib_DiffractionImage.lax/libmar.a/pck.o .libs/lib_DiffractionImage.lax/librigaku.a/ReadRAXISImages.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcapimin.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcapistd.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcc!
oefct.o .libs/lib_DiffractionImage.lax/libjpeg.a/jccolor.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcdctmgr.o .libs/lib_DiffractionImage.lax/libjpeg.a/jchuff.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcinit.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcmainct.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcmarker.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcmaster.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcomapi.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcparam.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcphuff.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcprepct.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcsample.o .libs/lib_DiffractionImage.lax/libjpeg.a/jctrans.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdapimin.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdapistd.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdatadst.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdatasrc.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdcoefct.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdcolor.o .libs/lib_DiffractionImage.lax/libjpeg.a/jddctmgr.o .libs/lib_Diffraction!
Image.lax/libjpeg.a/jdhuff.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdinput.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdmainct.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdmarker.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdmaster.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdmerge.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdphuff.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdpostct.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdsample.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdtrans.o .libs/lib_DiffractionImage.lax/libjpeg.a/jerror.o .libs/lib_DiffractionImage.lax/libjpeg.a/jfdctflt.o .libs/lib_DiffractionImage.lax/libjpeg.a/jfdctfst.o .libs/lib_DiffractionImage.lax/libjpeg.a/jfdctint.o .libs/lib_DiffractionImage.lax/libjpeg.a/jidctflt.o .libs/lib_DiffractionImage.lax/libjpeg.a/jidctfst.o .libs/lib_DiffractionImage.lax/libjpeg.a/jidctint.o .libs/lib_DiffractionImage.lax/libjpeg.a/jidctred.o .libs/lib_DiffractionImage.lax/libjpeg.a/jquant1.o .libs/lib_DiffractionImage.lax!
/libjpeg.a/jquant2.o .libs/lib_DiffractionImage.lax/libjpeg.a/jutils.o .libs/lib_DiffractionImage.lax/libjpeg.a/jmemmgr.o .libs/lib_DiffractionImage.lax/libjpeg.a/jmemnobs.o
> ranlib .libs/lib_DiffractionImage.a
> rm -fr .libs/lib_DiffractionImage.lax
> creating lib_DiffractionImage.la
> (cd .libs && rm -f lib_DiffractionImage.la && ln -s ../lib_DiffractionImage.la lib_DiffractionImage.la)
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c -o DiffractionImageTclInterface.lo DiffractionImageTclInterface.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c DiffractionImageTclInterface.cpp -fPIC -DPIC -o .libs/DiffractionImageTclInterface.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c DiffractionImageTclInterface.cpp -fPIC -DPIC -o DiffractionImageTclInterface.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageTclInterface.Tpo .deps/DiffractionImageTclInterface.Plo
> /bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -shared --whole-archive libDiffImage.la ./CBFlib/src/libcbf.la ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la --no-whole-archive -rpath '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib' -o libDiffractionImage.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib DiffractionImageTclInterface.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/DiffractionImageTclInterface.o -Wl,--whole-archive ./CBFlib/src/.libs/libcbf.a ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -Wl,--no-whole-archive ./.libs/libDiffImage.a -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -Wl,-soname -Wl,libDiffractionImage.so.0 -o .libs/libDiffractionImage.so.0.0.0
> (cd .libs && rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0)
> (cd .libs && rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so)
> rm -fr .libs/libDiffractionImage.lax
> mkdir .libs/libDiffractionImage.lax
> rm -fr .libs/libDiffractionImage.lax/libcbf.a
> mkdir .libs/libDiffractionImage.lax/libcbf.a
> (cd .libs/libDiffractionImage.lax/libcbf.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./CBFlib/src/.libs/libcbf.a)
> rm -fr .libs/libDiffractionImage.lax/libbruker.a
> mkdir .libs/libDiffractionImage.lax/libbruker.a
> (cd .libs/libDiffractionImage.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./Bruker/.libs/libbruker.a)
> rm -fr .libs/libDiffractionImage.lax/libmar.a
> mkdir .libs/libDiffractionImage.lax/libmar.a
> (cd .libs/libDiffractionImage.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./MAR/.libs/libmar.a)
> rm -fr .libs/libDiffractionImage.lax/librigaku.a
> mkdir .libs/libDiffractionImage.lax/librigaku.a
> (cd .libs/libDiffractionImage.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./Rigaku/.libs/librigaku.a)
> rm -fr .libs/libDiffractionImage.lax/libjpeg.a
> mkdir .libs/libDiffractionImage.lax/libjpeg.a
> (cd .libs/libDiffractionImage.lax/libjpeg.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./jpg/.libs/libjpeg.a)
> ar cru .libs/libDiffractionImage.a DiffractionImageTclInterface.o .libs/libDiffractionImage.lax/libcbf.a/cbf.o .libs/libDiffractionImage.lax/libcbf.a/cbf_alloc.o .libs/libDiffractionImage.lax/libcbf.a/cbf_ascii.o .libs/libDiffractionImage.lax/libcbf.a/cbf_binary.o .libs/libDiffractionImage.lax/libcbf.a/cbf_byte_offset.o .libs/libDiffractionImage.lax/libcbf.a/cbf_canonical.o .libs/libDiffractionImage.lax/libcbf.a/cbf_codes.o .libs/libDiffractionImage.lax/libcbf.a/cbf_compress.o .libs/libDiffractionImage.lax/libcbf.a/cbf_context.o .libs/libDiffractionImage.lax/libcbf.a/cbf_file.o .libs/libDiffractionImage.lax/libcbf.a/cbf_lex.o .libs/libDiffractionImage.lax/libcbf.a/cbf_packed.o .libs/libDiffractionImage.lax/libcbf.a/cbf_predictor.o .libs/libDiffractionImage.lax/libcbf.a/cbf_read_binary.o .libs/libDiffractionImage.lax/libcbf.a/cbf_read_mime.o .libs/libDiffractionImage.lax/libcbf.a/cbf_simple.o .libs/libDiffractionImage.lax/libcbf.a/cbf_string.o .libs/libDiffractionImage.la!
x/libcbf.a/cbf_stx.o .libs/libDiffractionImage.lax/libcbf.a/cbf_tree.o .libs/libDiffractionImage.lax/libcbf.a/cbf_uncompressed.o .libs/libDiffractionImage.lax/libcbf.a/cbf_write.o .libs/libDiffractionImage.lax/libcbf.a/cbf_write_binary.o .libs/libDiffractionImage.lax/libcbf.a/md5c.o .libs/libDiffractionImage.lax/libbruker.a/FrmRoutines.o .libs/libDiffractionImage.lax/libbruker.a/FRM_LIB.o .libs/libDiffractionImage.lax/libmar.a/mar300_header.o .libs/libDiffractionImage.lax/libmar.a/mar345_header.o .libs/libDiffractionImage.lax/libmar.a/marcif.o .libs/libDiffractionImage.lax/libmar.a/nb_header.o .libs/libDiffractionImage.lax/libmar.a/swap.o .libs/libDiffractionImage.lax/libmar.a/utils.o .libs/libDiffractionImage.lax/libmar.a/pck.o .libs/libDiffractionImage.lax/librigaku.a/ReadRAXISImages.o .libs/libDiffractionImage.lax/libjpeg.a/jcapimin.o .libs/libDiffractionImage.lax/libjpeg.a/jcapistd.o .libs/libDiffractionImage.lax/libjpeg.a/jccoefct.o .libs/libDiffractionImage.lax/li!
bjpeg.a/jccolor.o .libs/libDiffractionImage.lax/libjpeg.a/jcdctmgr.o .libs/libDiffractionImage.lax/libjpeg.a/jchuff.o .libs/libDiffractionImage.lax/libjpeg.a/jcinit.o .libs/libDiffractionImage.lax/libjpeg.a/jcmainct.o .libs/libDiffractionImage.lax/libjpeg.a/jcmarker.o .libs/libDiffractionImage.lax/libjpeg.a/jcmaster.o .libs/libDiffractionImage.lax/libjpeg.a/jcomapi.o .libs/libDiffractionImage.lax/libjpeg.a/jcparam.o .libs/libDiffractionImage.lax/libjpeg.a/jcphuff.o .libs/libDiffractionImage.lax/libjpeg.a/jcprepct.o .libs/libDiffractionImage.lax/libjpeg.a/jcsample.o .libs/libDiffractionImage.lax/libjpeg.a/jctrans.o .libs/libDiffractionImage.lax/libjpeg.a/jdapimin.o .libs/libDiffractionImage.lax/libjpeg.a/jdapistd.o .libs/libDiffractionImage.lax/libjpeg.a/jdatadst.o .libs/libDiffractionImage.lax/libjpeg.a/jdatasrc.o .libs/libDiffractionImage.lax/libjpeg.a/jdcoefct.o .libs/libDiffractionImage.lax/libjpeg.a/jdcolor.o .libs/libDiffractionImage.lax/libjpeg.a/jddctmgr.o .libs/libDiffractionImage.lax/libjpeg.a/jdhuff.o .libs/libDiffractionImage.lax/li!
bjpeg.a/jdinput.o .libs/libDiffractionImage.lax/libjpeg.a/jdmainct.o .libs/libDiffractionImage.lax/libjpeg.a/jdmarker.o .libs/libDiffractionImage.lax/libjpeg.a/jdmaster.o .libs/libDiffractionImage.lax/libjpeg.a/jdmerge.o .libs/libDiffractionImage.lax/libjpeg.a/jdphuff.o .libs/libDiffractionImage.lax/libjpeg.a/jdpostct.o .libs/libDiffractionImage.lax/libjpeg.a/jdsample.o .libs/libDiffractionImage.lax/libjpeg.a/jdtrans.o .libs/libDiffractionImage.lax/libjpeg.a/jerror.o .libs/libDiffractionImage.lax/libjpeg.a/jfdctflt.o .libs/libDiffractionImage.lax/libjpeg.a/jfdctfst.o .libs/libDiffractionImage.lax/libjpeg.a/jfdctint.o .libs/libDiffractionImage.lax/libjpeg.a/jidctflt.o .libs/libDiffractionImage.lax/libjpeg.a/jidctfst.o .libs/libDiffractionImage.lax/libjpeg.a/jidctint.o .libs/libDiffractionImage.lax/libjpeg.a/jidctred.o .libs/libDiffractionImage.lax/libjpeg.a/jquant1.o .libs/libDiffractionImage.lax/libjpeg.a/jquant2.o .libs/libDiffractionImage.lax/libjpeg.a/jutils.o .libs/libD!
iffractionImage.lax/libjpeg.a/jmemmgr.o .libs/libDiffractionImage.lax/libjpeg.a/jmemnobs.o
> ranlib .libs/libDiffractionImage.a
> rm -fr .libs/libDiffractionImage.lax
> creating libDiffractionImage.la
> (cd .libs && rm -f libDiffractionImage.la && ln -s ../libDiffractionImage.la libDiffractionImage.la)
> /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c -o DiffractionImageJavaInterface.lo DiffractionImageJavaInterface.cpp
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c DiffractionImageJavaInterface.cpp -fPIC -DPIC -o .libs/DiffractionImageJavaInterface.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c DiffractionImageJavaInterface.cpp -fPIC -DPIC -o DiffractionImageJavaInterface.o >/dev/null 2>&1
> mv -f .deps/DiffractionImageJavaInterface.Tpo .deps/DiffractionImageJavaInterface.Plo
> /bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -shared --whole-archive libDiffImage.la ./CBFlib/src/libcbf.la ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la --no-whole-archive -rpath '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib' -o libDiffractionImaJ.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib DiffractionImageJavaInterface.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/DiffractionImageJavaInterface.o -Wl,--whole-archive ./CBFlib/src/.libs/libcbf.a ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -Wl,--no-whole-archive ./.libs/libDiffImage.a -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -Wl,-soname -Wl,libDiffractionImaJ.so.0 -o .libs/libDiffractionImaJ.so.0.0.0
> (cd .libs && rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0)
> (cd .libs && rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so)
> rm -fr .libs/libDiffractionImaJ.lax
> mkdir .libs/libDiffractionImaJ.lax
> rm -fr .libs/libDiffractionImaJ.lax/libcbf.a
> mkdir .libs/libDiffractionImaJ.lax/libcbf.a
> (cd .libs/libDiffractionImaJ.lax/libcbf.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./CBFlib/src/.libs/libcbf.a)
> rm -fr .libs/libDiffractionImaJ.lax/libbruker.a
> mkdir .libs/libDiffractionImaJ.lax/libbruker.a
> (cd .libs/libDiffractionImaJ.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./Bruker/.libs/libbruker.a)
> rm -fr .libs/libDiffractionImaJ.lax/libmar.a
> mkdir .libs/libDiffractionImaJ.lax/libmar.a
> (cd .libs/libDiffractionImaJ.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./MAR/.libs/libmar.a)
> rm -fr .libs/libDiffractionImaJ.lax/librigaku.a
> mkdir .libs/libDiffractionImaJ.lax/librigaku.a
> (cd .libs/libDiffractionImaJ.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./Rigaku/.libs/librigaku.a)
> rm -fr .libs/libDiffractionImaJ.lax/libjpeg.a
> mkdir .libs/libDiffractionImaJ.lax/libjpeg.a
> (cd .libs/libDiffractionImaJ.lax/libjpeg.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./jpg/.libs/libjpeg.a)
> ar cru .libs/libDiffractionImaJ.a DiffractionImageJavaInterface.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_alloc.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_ascii.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_binary.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_byte_offset.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_canonical.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_codes.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_compress.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_context.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_file.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_lex.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_packed.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_predictor.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_read_binary.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_read_mime.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_simple.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_string.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_stx!
.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_tree.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_uncompressed.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_write.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_write_binary.o .libs/libDiffractionImaJ.lax/libcbf.a/md5c.o .libs/libDiffractionImaJ.lax/libbruker.a/FrmRoutines.o .libs/libDiffractionImaJ.lax/libbruker.a/FRM_LIB.o .libs/libDiffractionImaJ.lax/libmar.a/mar300_header.o .libs/libDiffractionImaJ.lax/libmar.a/mar345_header.o .libs/libDiffractionImaJ.lax/libmar.a/marcif.o .libs/libDiffractionImaJ.lax/libmar.a/nb_header.o .libs/libDiffractionImaJ.lax/libmar.a/swap.o .libs/libDiffractionImaJ.lax/libmar.a/utils.o .libs/libDiffractionImaJ.lax/libmar.a/pck.o .libs/libDiffractionImaJ.lax/librigaku.a/ReadRAXISImages.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcapimin.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcapistd.o .libs/libDiffractionImaJ.lax/libjpeg.a/jccoefct.o .libs/libDiffractionImaJ.lax/libjpeg.a/jccolor.o .libs/libDiffractio!
nImaJ.lax/libjpeg.a/jcdctmgr.o .libs/libDiffractionImaJ.lax/libjpeg.a/jchuff.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcinit.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcmainct.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcmarker.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcmaster.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcomapi.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcparam.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcphuff.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcprepct.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcsample.o .libs/libDiffractionImaJ.lax/libjpeg.a/jctrans.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdapimin.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdapistd.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdatadst.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdatasrc.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdcoefct.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdcolor.o .libs/libDiffractionImaJ.lax/libjpeg.a/jddctmgr.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdhuff.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdinput.o .libs/libDiffractionImaJ.lax/libjpeg.a/j!
dmainct.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdmarker.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdmaster.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdmerge.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdphuff.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdpostct.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdsample.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdtrans.o .libs/libDiffractionImaJ.lax/libjpeg.a/jerror.o .libs/libDiffractionImaJ.lax/libjpeg.a/jfdctflt.o .libs/libDiffractionImaJ.lax/libjpeg.a/jfdctfst.o .libs/libDiffractionImaJ.lax/libjpeg.a/jfdctint.o .libs/libDiffractionImaJ.lax/libjpeg.a/jidctflt.o .libs/libDiffractionImaJ.lax/libjpeg.a/jidctfst.o .libs/libDiffractionImaJ.lax/libjpeg.a/jidctint.o .libs/libDiffractionImaJ.lax/libjpeg.a/jidctred.o .libs/libDiffractionImaJ.lax/libjpeg.a/jquant1.o .libs/libDiffractionImaJ.lax/libjpeg.a/jquant2.o .libs/libDiffractionImaJ.lax/libjpeg.a/jutils.o .libs/libDiffractionImaJ.lax/libjpeg.a/jmemmgr.o .libs/libDiffractionImaJ.lax/libjpeg.a!
/jmemnobs.o
> ranlib .libs/libDiffractionImaJ.a
> rm -fr .libs/libDiffractionImaJ.lax
> creating libDiffractionImaJ.la
> (cd .libs && rm -f libDiffractionImaJ.la && ln -s ../libDiffractionImaJ.la libDiffractionImaJ.la)
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT automask.o -MD -MP -MF .deps/automask.Tpo -c -o automask.o automask.cpp
> mv -f .deps/automask.Tpo .deps/automask.Po
> /bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -o automask automask.o libDiffImage.la ./Bruker/libbruker.la ./CBFlib/src/libcbf.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la -lm
> x86_64-pc-linux-gnu-g++ -g -O0 -o automask automask.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a ./CBFlib/src/.libs/libcbf.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -lm
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT diffdump.o -MD -MP -MF .deps/diffdump.Tpo -c -o diffdump.o diffdump.cpp
> mv -f .deps/diffdump.Tpo .deps/diffdump.Po
> /bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -o diffdump diffdump.o libDiffImage.la ./Bruker/libbruker.la ./CBFlib/src/libcbf.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la -lm
> x86_64-pc-linux-gnu-g++ -g -O0 -o diffdump diffdump.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a ./CBFlib/src/.libs/libcbf.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -lm
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT printpeaks.o -MD -MP -MF .deps/printpeaks.Tpo -c -o printpeaks.o printpeaks.cpp
> mv -f .deps/printpeaks.Tpo .deps/printpeaks.Po
> /bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -o printpeaks printpeaks.o libDiffImage.la ./Bruker/libbruker.la ./CBFlib/src/libcbf.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la -lm
> x86_64-pc-linux-gnu-g++ -g -O0 -o printpeaks printpeaks.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a ./CBFlib/src/.libs/libcbf.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -lm
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT diff2jpeg.o -MD -MP -MF .deps/diff2jpeg.Tpo -c -o diff2jpeg.o diff2jpeg.cpp
> mv -f .deps/diff2jpeg.Tpo .deps/diff2jpeg.Po
> /bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -o diff2jpeg diff2jpeg.o libDiffImage.la ./Bruker/libbruker.la ./CBFlib/src/libcbf.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la -lm
> x86_64-pc-linux-gnu-g++ -g -O0 -o diff2jpeg diff2jpeg.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a ./CBFlib/src/.libs/libcbf.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -lm
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib"
> /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.la'
> /usr/bin/install -c .libs/libDiffImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.la
> /usr/bin/install -c .libs/libDiffImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ./libtool --mode=install /usr/bin/install -c 'lib_DiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.la'
> /usr/bin/install -c .libs/lib_DiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.so.0.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0 || { rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so || { rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so; }; })
> /usr/bin/install -c .libs/lib_DiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.la
> /usr/bin/install -c .libs/lib_DiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.la'
> /usr/bin/install -c .libs/libDiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.so.0.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so.0 || { rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so || { rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so; }; })
> /usr/bin/install -c .libs/libDiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.la
> /usr/bin/install -c .libs/libDiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImaJ.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.la'
> /usr/bin/install -c .libs/libDiffractionImaJ.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.so.0.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0 || { rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so || { rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so; }; })
> /usr/bin/install -c .libs/libDiffractionImaJ.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.la
> /usr/bin/install -c .libs/libDiffractionImaJ.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin"
> /bin/sh ./libtool --mode=install cp -p 'automask' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/automask'
> cp -p automask /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/automask
> /bin/sh ./libtool --mode=install cp -p 'diffdump' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diffdump'
> cp -p diffdump /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diffdump
> /bin/sh ./libtool --mode=install cp -p 'printpeaks' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/printpeaks'
> cp -p printpeaks /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/printpeaks
> /bin/sh ./libtool --mode=install cp -p 'diff2jpeg' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diff2jpeg'
> cp -p diff2jpeg /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diff2jpeg
> cp -p doc/DiffractionImage.doc /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/doc
> cp -p doc/DiffractionImage.html /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/html
> cp -p *.py /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/share/python
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif'
> if test -f /librx.a; then \
> rm -rf rx.dir; mkdir rx.dir; \
> echo 'rxdispencer routines being added to library'; \
> cp /librx.a rx.dir; cd rx.dir; \
> ar -x librx.a; cd ..; \
> ar r libccif.a rx.dir/*.o; \
> ranlib libccif.a; rm -rf rx.dir; \
> fi
> ld -fPIC -shared -soname libccif.so --whole-archive libccif.a -o libccif.so
> cp -p `pwd`/libccif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccif.a
> cp -p `pwd`/cif_mmdic.lib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/cif_mmdic.lib
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccif.a
> if (test -f libccif.so); then \
> cp -p `pwd`/libccif.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccif.so; \
> fi
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif'
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src'
> ld -shared -soname libmmdb.so --whole-archive -o libmmdb.so libmmdb.a; ld -shared -soname libccp4c.so --whole-archive -o libccp4c.so libccp4c.a; ld -shared -soname libccp4f.so --whole-archive -o libccp4f.so libccp4f.a
> if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4; then mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4; fi
> cp -p ccp4_file_err.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_file_err.h
> cp -p ccp4_program.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_program.h
> cp -p ccp4_unitcell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_unitcell.h
> cp -p cmap_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_errno.h
> cp -p cmap_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_stats.h
> cp -p csymlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/csymlib.h
> cp -p library_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/library_file.h
> cp -p w32mvs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/w32mvs.h
> cp -p ccp4_fortran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_fortran.h
> cp -p ccp4_spg.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_spg.h
> cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_utils.h
> cp -p cmap_header.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_header.h
> cp -p cmaplib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmaplib.h
> cp -p cvecmat.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cvecmat.h
> cp -p mtzdata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/mtzdata.h
> cp -p ccp4_array.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_array.h
> cp -p ccp4_general.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_general.h
> cp -p ccp4_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_sysdep.h
> cp -p ccp4_vars.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_vars.h
> cp -p cmap_labels.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_labels.h
> cp -p cmaplib_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmaplib_f.h
> cp -p overview.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/overview.h
> cp -p ccp4_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_errno.h
> cp -p ccp4_parser.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_parser.h
> cp -p ccp4_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_types.h
> cp -p cmap_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_data.h
> cp -p cmap_skew.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_skew.h
> cp -p cmtzlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmtzlib.h
> cp -p library_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/library_f.h
> if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb; then mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb; fi
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/bfgs_min.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/bfgs_min.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/math_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/math_.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_bondmngr.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_bondmngr.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_cryst.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_cryst.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_graph.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_graph.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_model.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_model.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_symop.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_symop.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_utils.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/file_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/file_.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mattype_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mattype_.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_chain.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_chain.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_defs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_defs.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_manager.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_manager.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_rwbrook.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_rwbrook.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_tables.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_tables.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_xml.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_xml.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/linalg_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/linalg_.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_align.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_align.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_cifdefs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_cifdefs.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_ficif.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_ficif.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_mask.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_mask.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_sbase.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_sbase.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_title.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_title.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/random_n.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/random_n.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/machine_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/machine_.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_atom.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_atom.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_coormngr.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_coormngr.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_file.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_mmcif.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_mmcif.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_selmngr.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_selmngr.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_uddata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_uddata.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/stream_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/stream_.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_sbase0.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_sbase0.h
> cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/hybrid_36.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/hybrid_36.h
> cp -p `pwd`/./libmmdb.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libmmdb.a
> cp -p `pwd`/./libccp4c.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4c.a
> cp -p `pwd`/./libccp4f.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4f.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libmmdb.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4c.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4f.a
> cp -p `pwd`/libmmdb.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libmmdb.so; cp -p `pwd`/libccp4c.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccp4c.so; cp -p `pwd`/libccp4f.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccp4f.so;
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src'
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
> if /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ssm_superpose.lo -MD -MP -MF ".deps/ssm_superpose.Tpo" -c -o ssm_superpose.lo ssm_superpose.cpp; \
> then mv -f ".deps/ssm_superpose.Tpo" ".deps/ssm_superpose.Plo"; else rm -f ".deps/ssm_superpose.Tpo"; exit 1; fi
> mkdir .libs
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ssm_superpose.lo -MD -MP -MF .deps/ssm_superpose.Tpo -c ssm_superpose.cpp -fPIC -DPIC -o .libs/ssm_superpose.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ssm_superpose.lo -MD -MP -MF .deps/ssm_superpose.Tpo -c ssm_superpose.cpp -o ssm_superpose.o >/dev/null 2>&1
> if /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_csia.lo -MD -MP -MF ".deps/ss_csia.Tpo" -c -o ss_csia.lo ss_csia.cpp; \
> then mv -f ".deps/ss_csia.Tpo" ".deps/ss_csia.Plo"; else rm -f ".deps/ss_csia.Tpo"; exit 1; fi
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_csia.lo -MD -MP -MF .deps/ss_csia.Tpo -c ss_csia.cpp -fPIC -DPIC -o .libs/ss_csia.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_csia.lo -MD -MP -MF .deps/ss_csia.Tpo -c ss_csia.cpp -o ss_csia.o >/dev/null 2>&1
> if /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_vxedge.lo -MD -MP -MF ".deps/ss_vxedge.Tpo" -c -o ss_vxedge.lo ss_vxedge.cpp; \
> then mv -f ".deps/ss_vxedge.Tpo" ".deps/ss_vxedge.Plo"; else rm -f ".deps/ss_vxedge.Tpo"; exit 1; fi
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_vxedge.lo -MD -MP -MF .deps/ss_vxedge.Tpo -c ss_vxedge.cpp -fPIC -DPIC -o .libs/ss_vxedge.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_vxedge.lo -MD -MP -MF .deps/ss_vxedge.Tpo -c ss_vxedge.cpp -o ss_vxedge.o >/dev/null 2>&1
> if /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ssm_align.lo -MD -MP -MF ".deps/ssm_align.Tpo" -c -o ssm_align.lo ssm_align.cpp; \
> then mv -f ".deps/ssm_align.Tpo" ".deps/ssm_align.Plo"; else rm -f ".deps/ssm_align.Tpo"; exit 1; fi
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ssm_align.lo -MD -MP -MF .deps/ssm_align.Tpo -c ssm_align.cpp -fPIC -DPIC -o .libs/ssm_align.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ssm_align.lo -MD -MP -MF .deps/ssm_align.Tpo -c ssm_align.cpp -o ssm_align.o >/dev/null 2>&1
> if /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_graph.lo -MD -MP -MF ".deps/ss_graph.Tpo" -c -o ss_graph.lo ss_graph.cpp; \
> then mv -f ".deps/ss_graph.Tpo" ".deps/ss_graph.Plo"; else rm -f ".deps/ss_graph.Tpo"; exit 1; fi
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_graph.lo -MD -MP -MF .deps/ss_graph.Tpo -c ss_graph.cpp -fPIC -DPIC -o .libs/ss_graph.o
> x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_graph.lo -MD -MP -MF .deps/ss_graph.Tpo -c ss_graph.cpp -o ss_graph.o >/dev/null 2>&1
> /bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -lmmdb -o libssm.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib ssm_superpose.lo ss_csia.lo ss_vxedge.lo ssm_align.lo ss_graph.lo -lm
> x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/ssm_superpose.o .libs/ss_csia.o .libs/ss_vxedge.o .libs/ssm_align.o .libs/ss_graph.o -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -lmmdb -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libssm.so.0 -o .libs/libssm.so.0.0.0
> (cd .libs && rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0)
> (cd .libs && rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so)
> ar cru .libs/libssm.a ssm_superpose.o ss_csia.o ss_vxedge.o ssm_align.o ss_graph.o
> ranlib .libs/libssm.a
> creating libssm.la
> (cd .libs && rm -f libssm.la && ln -s ../libssm.la libssm.la)
> if x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT superpose.o -MD -MP -MF ".deps/superpose.Tpo" -c -o superpose.o superpose.cpp; \
> then mv -f ".deps/superpose.Tpo" ".deps/superpose.Po"; else rm -f ".deps/superpose.Tpo"; exit 1; fi
> /bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -lmmdb -o superpose superpose.o libssm.la -lm
> x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o .libs/superpose superpose.o -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src ./.libs/libssm.so -lmmdb -lm -Wl,--rpath -Wl,/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> creating superpose
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
> test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib"
> /bin/sh ./libtool --mode=install /usr/bin/install -c 'libssm.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.la'
> /usr/bin/install -c .libs/libssm.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.so.0.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libssm.so.0.0.0 libssm.so.0 || { rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libssm.so.0.0.0 libssm.so || { rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so; }; })
> /usr/bin/install -c .libs/libssm.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.la
> /usr/bin/install -c .libs/libssm.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin"
> /bin/sh ./libtool --mode=install cp -p 'superpose' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/superpose'
> cp -p .libs/superpose /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/superpose
> test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm"
> cp -p 'ss_graph.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ss_graph.h'
> cp -p 'ssm_superpose.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ssm_superpose.h'
> cp -p 'ss_csia.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ss_csia.h'
> cp -p 'ss_vxedge.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ss_vxedge.h'
> cp -p 'ssm_align.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ssm_align.h'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data'
> gfortran -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC -o fontpack /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data/fontpack.f -L../src -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -lccp4f -lccp4c -lmmdb -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -lccif -L/usr/lib64 -llapack -lstdc++ -Wl,-rpath,/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -lm
> rm -f font84.dat
> test -f font84.ascii || ln -s /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data/font84.ascii .
> ./fontpack
> cp `pwd`/font84.dat /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/font84.dat
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data'
> make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1'
> if test -n "lib/clipper"; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper; \
> make -i -l 8 ; else true; fi ; \
> make install
> make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> Making all in phs
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
> Making all in contrib
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
> Making all in cif
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
> Making all in mmdb
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
> Making all in mmdbold
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
> Making all in minimol
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
> Making all in ccp4
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
> Making all in cns
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
> Making all in core
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> make[2]: Nothing to be done for `all-am'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> Making install in phs
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-phs.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.la
> /usr/bin/install -c .libs/libclipper-phs.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-phs.so.2.0.0 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.0 libclipper-phs.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-phs.so.2.0.0 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.0 libclipper-phs.so; }; })
> /usr/bin/install -c .libs/libclipper-phs.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.la
> /usr/bin/install -c .libs/libclipper-phs.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/phs
> cp -p phs_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/phs/phs_io.h
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
> Making install in contrib
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.la
> /usr/bin/install -c .libs/libclipper-contrib.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-contrib.so.2.0.0 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.0 libclipper-contrib.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-contrib.so.2.0.0 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.0 libclipper-contrib.so; }; })
> /usr/bin/install -c .libs/libclipper-contrib.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.la
> /usr/bin/install -c .libs/libclipper-contrib.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib
> cp -p convolution_search.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/convolution_search.h
> cp -p mapfilter.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/mapfilter.h
> cp -p sfscale.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfscale.h
> cp -p edcalc.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/edcalc.h
> cp -p originmatch.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/originmatch.h
> cp -p sfweight.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfweight.h
> cp -p fffear.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/fffear.h
> cp -p sfcalc.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfcalc.h
> cp -p skeleton.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/skeleton.h
> cp -p function_object_bases.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/function_object_bases.h
> cp -p sfcalc_obs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfcalc_obs.h
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
> Making install in cif
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-cif.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.la
> /usr/bin/install -c .libs/libclipper-cif.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cif.so.2.0.0 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.0 libclipper-cif.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cif.so.2.0.0 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.0 libclipper-cif.so; }; })
> /usr/bin/install -c .libs/libclipper-cif.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.la
> /usr/bin/install -c .libs/libclipper-cif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cif
> cp -p cif_data_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cif/cif_data_io.h
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
> Making install in mmdb
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-mmdb.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.la
> /usr/bin/install -c .libs/libclipper-mmdb.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdb.so.2.0.0 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.0 libclipper-mmdb.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdb.so.2.0.0 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.0 libclipper-mmdb.so; }; })
> /usr/bin/install -c .libs/libclipper-mmdb.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.la
> /usr/bin/install -c .libs/libclipper-mmdb.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdb
> cp -p clipper_mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdb/clipper_mmdb.h
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
> Making install in mmdbold
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-mmdbold.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.la
> /usr/bin/install -c .libs/libclipper-mmdbold.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so.2 || { rm -f libclipper-mmdbold.so.2 && ln -s libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so || { rm -f libclipper-mmdbold.so && ln -s libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so; }; })
> /usr/bin/install -c .libs/libclipper-mmdbold.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.la
> /usr/bin/install -c .libs/libclipper-mmdbold.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold
> cp -p clipper_mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/clipper_mmdb.h
> cp -p clipper_mmdb_wrapper.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/clipper_mmdb_wrapper.h
> cp -p clipper_mmdb_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/clipper_mmdb_types.h
> cp -p container_mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/container_mmdb.h
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
> Making install in minimol
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-minimol.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.la
> /usr/bin/install -c .libs/libclipper-minimol.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-minimol.so.2.0.0 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.0 libclipper-minimol.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-minimol.so.2.0.0 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.0 libclipper-minimol.so; }; })
> /usr/bin/install -c .libs/libclipper-minimol.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.la
> /usr/bin/install -c .libs/libclipper-minimol.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol
> cp -p container_minimol.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/container_minimol.h
> cp -p minimol_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_data.h
> cp -p minimol_seq.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_seq.h
> cp -p minimol.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol.h
> cp -p minimol_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_io.h
> cp -p minimol_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_utils.h
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
> Making install in ccp4
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-ccp4.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.la
> /usr/bin/install -c .libs/libclipper-ccp4.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-ccp4.so.2.0.0 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.0 libclipper-ccp4.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-ccp4.so.2.0.0 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.0 libclipper-ccp4.so; }; })
> /usr/bin/install -c .libs/libclipper-ccp4.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.la
> /usr/bin/install -c .libs/libclipper-ccp4.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4
> cp -p ccp4_map_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_map_io.h
> cp -p ccp4_mtz_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_mtz_io.h
> cp -p ccp4_mtz_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_mtz_types.h
> cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_utils.h
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
> Making install in cns
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-cns.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.la
> /usr/bin/install -c .libs/libclipper-cns.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.so.0.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cns.so.0.0.0 libclipper-cns.so.0 || { rm -f libclipper-cns.so.0 && ln -s libclipper-cns.so.0.0.0 libclipper-cns.so.0; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cns.so.0.0.0 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.0.0.0 libclipper-cns.so; }; })
> /usr/bin/install -c .libs/libclipper-cns.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.la
> /usr/bin/install -c .libs/libclipper-cns.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns
> cp -p cns_hkl_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns/cns_hkl_io.h
> cp -p cns_map_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns/cns_map_io.h
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
> Making install in core
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-core.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.la
> /usr/bin/install -c .libs/libclipper-core.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.so.2.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-core.so.2.0.0 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.0 libclipper-core.so.2; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-core.so.2.0.0 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.0 libclipper-core.so; }; })
> /usr/bin/install -c .libs/libclipper-core.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.la
> /usr/bin/install -c .libs/libclipper-core.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core
> cp -p atomsf.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/atomsf.h
> cp -p container_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container_types.h
> cp -p nxmap_operator.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/nxmap_operator.h
> cp -p cell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/cell.h
> cp -p coords.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/coords.h
> cp -p ramachandran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/ramachandran.h
> cp -p clipper_instance.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_instance.h
> cp -p derivs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/derivs.h
> cp -p resol_basisfn.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/resol_basisfn.h
> cp -p clipper_memory.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_memory.h
> cp -p fftmap.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/fftmap.h
> cp -p resol_fn.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/resol_fn.h
> cp -p clipper_message.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_message.h
> cp -p fftmap_sparse.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/fftmap_sparse.h
> cp -p resol_targetfn.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/resol_targetfn.h
> cp -p clipper_precision.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_precision.h
> cp -p hkl_compute.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_compute.h
> cp -p rotation.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/rotation.h
> cp -p clipper_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_stats.h
> cp -p hkl_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_data.h
> cp -p spacegroup.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/spacegroup.h
> cp -p clipper_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_sysdep.h
> cp -p hkl_datatypes.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_datatypes.h
> cp -p spacegroup_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/spacegroup_data.h
> cp -p clipper_test.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_test.h
> cp -p hkl_info.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_info.h
> cp -p symop.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/symop.h
> cp -p clipper_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_types.h
> cp -p hkl_lookup.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_lookup.h
> cp -p clipper_util.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_util.h
> cp -p hkl_operators.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_operators.h
> cp -p container.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container.h
> cp -p map_interp.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/map_interp.h
> cp -p xmap.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/xmap.h
> cp -p container_hkl.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container_hkl.h
> cp -p map_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/map_utils.h
> cp -p container_map.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container_map.h
> cp -p nxmap.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/nxmap.h
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> make[3]: Nothing to be done for `install-exec-am'.
> /bin/sh ../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper
> cp -p clipper-ccp4.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-ccp4.h
> cp -p clipper-contrib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-contrib.h
> cp -p clipper-phs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-phs.h
> cp -p clipper-cctbx.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-cctbx.h
> cp -p clipper-minimol.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-minimol.h
> cp -p clipper.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper.h
> cp -p clipper-cif.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-cif.h
> cp -p clipper-mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-mmdb.h
> cp -p minimal-clipper-hkl.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimal-clipper-hkl.h
> cp -p clipper-cns.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-cns.h
> cp -p clipper-mmdbold.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-mmdbold.h
> cp -p minimal-clipper-map.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimal-clipper-map.h
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
> if test -n "lib/ssm"; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm; \
> make -i -l 8 ; else true; fi ; \
> make install
> make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
> make[1]: Nothing to be done for `all'.
> make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
> make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
> test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib"
> /bin/sh ./libtool --mode=install /usr/bin/install -c 'libssm.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.la'
> /usr/bin/install -c .libs/libssm.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.so.0.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libssm.so.0.0.0 libssm.so.0 || { rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libssm.so.0.0.0 libssm.so || { rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so; }; })
> /usr/bin/install -c .libs/libssm.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.la
> /usr/bin/install -c .libs/libssm.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin"
> /bin/sh ./libtool --mode=install cp -p 'superpose' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/superpose'
> cp -p .libs/superpose /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/superpose
> test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm"
> cp -p 'ss_graph.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ss_graph.h'
> cp -p 'ssm_superpose.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ssm_superpose.h'
> cp -p 'ss_csia.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ss_csia.h'
> cp -p 'ss_vxedge.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ss_vxedge.h'
> cp -p 'ssm_align.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ssm_align.h'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
> make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
> if test -n "lib/DiffractionImage"; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage; \
> make -i -l 8 ; else true; fi ; \
> make install
> make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> Making all in CBFlib
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> Making all in src
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Nothing to be done for `all'.
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Nothing to be done for `all-am'.
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> Making all in Bruker
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
> Making all in MAR
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
> Making all in Rigaku
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
> Making all in jpg
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[2]: Nothing to be done for `all-am'.
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> Making install in CBFlib
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> Making install in src
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Nothing to be done for `install-exec-am'.
> make[4]: Nothing to be done for `install-data-am'.
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Nothing to be done for `install-exec-am'.
> make[4]: Nothing to be done for `install-data-am'.
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
> Making install in Bruker
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Nothing to be done for `install-exec-am'.
> make[3]: Nothing to be done for `install-data-am'.
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
> Making install in MAR
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Nothing to be done for `install-exec-am'.
> make[3]: Nothing to be done for `install-data-am'.
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
> Making install in Rigaku
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Nothing to be done for `install-exec-am'.
> make[3]: Nothing to be done for `install-data-am'.
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
> Making install in jpg
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
> make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Nothing to be done for `install-exec-am'.
> make[3]: Nothing to be done for `install-data-am'.
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
> make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib"
> /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.la'
> /usr/bin/install -c .libs/libDiffImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.la
> /usr/bin/install -c .libs/libDiffImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ./libtool --mode=install /usr/bin/install -c 'lib_DiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.la'
> /usr/bin/install -c .libs/lib_DiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.so.0.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0 || { rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so || { rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so; }; })
> /usr/bin/install -c .libs/lib_DiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.la
> /usr/bin/install -c .libs/lib_DiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.la'
> /usr/bin/install -c .libs/libDiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.so.0.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so.0 || { rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so || { rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so; }; })
> /usr/bin/install -c .libs/libDiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.la
> /usr/bin/install -c .libs/libDiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImaJ.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.la'
> /usr/bin/install -c .libs/libDiffractionImaJ.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.so.0.0.0
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0 || { rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0; }; })
> (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so || { rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so; }; })
> /usr/bin/install -c .libs/libDiffractionImaJ.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.la
> /usr/bin/install -c .libs/libDiffractionImaJ.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.a
> chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.a
> ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.a
> PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
> /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
> during execution
> - add LIBDIR to the `LD_RUN_PATH' environment variable
> during linking
> - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin"
> /bin/sh ./libtool --mode=install cp -p 'automask' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/automask'
> cp -p automask /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/automask
> /bin/sh ./libtool --mode=install cp -p 'diffdump' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diffdump'
> cp -p diffdump /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diffdump
> /bin/sh ./libtool --mode=install cp -p 'printpeaks' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/printpeaks'
> cp -p printpeaks /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/printpeaks
> /bin/sh ./libtool --mode=install cp -p 'diff2jpeg' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diff2jpeg'
> cp -p diff2jpeg /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diff2jpeg
> cp -p doc/DiffractionImage.doc /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/doc
> cp -p doc/DiffractionImage.html /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/html
> cp -p *.py /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/share/python
> make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
> cd lib/data; make -l 8
> make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data'
> make[1]: Nothing to be done for `all'.
> make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data'
> >>> Source compiled.
--
***********************************************************************
* *
* Dr. Martyn Winn *
* *
* STFC Daresbury Laboratory, Daresbury, Warrington, WA4 4AD, U.K. *
* Tel: +44 1925 603455 E-mail: [log in to unmask] *
* Fax: +44 1925 603825 Skype name: martyn.winn *
* URL: http://www.ccp4.ac.uk/martyn/ *
***********************************************************************
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