Hi Mark,
Thank you verry much for your nice comments. I used the -schedule option
and got the result. However, I only want to compare to images with each
other. Imagine, both of them are structural T1 images. I'm not going to
compare the result of registration of EPI with structural T1. When I use this
option to do this comparison, it also registers my images and after registering
prints the result of cost function. I mean a simple least square error is enough
for my application if FSL has such a command.
Best,
Siamak
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