Hi,
I have 2 questions:
1-I am trying to use the tutorial on FIRST. when I
run the scripts:
[AJ@localhost first]$ run_first -i subject2_T1 -t
subject2_T1_to_std_sub.mat -n 10 -o
subject2_L_Caud_n10 \ -v -m
/usr/local/fsl/data/first/models_317_bin/L_Caud_bin.bmv
I get: /usr/local/fsl/bin/run_first: line 88: [: too
many arguments
does anyone know what am I doing wrong?
Question 2: when I run fast using default options in
the terminal, I get the output in the terminal with
CSF/GM/WM volumes. But when I run using segmentation
classes (-c 4) either in the terminal or GUI, I do not
see the output volumes in the terminal. It does say
that segmentaion was done successfully and the image
file is there. How do I get the volumes using -c 4
option as recommended. Do I need to use fsalmaths?
Also, which is better: getting segmentation from FAST
or SienaX?
thanks so much in advaance for your help.
Adil Javed
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