Dear List,
I am trying to run bedpostx on an 18 node mac pps cluster with os x 10.4.9
and fsl 4.0.1. I have modified fsl_sub for our sytem, which keeps sge
setting.sh in cluster/local and has a main queue called all.q.
Nevertheless, the errors presist:
sgifford$
/private/Network/Servers/hebb.hebb.private/Homes/sgifford/dti_cohen_hiv/hiv_dti.bedpostX/monitor
0 slices processed
0 slices processed, ad infinitum.
Would someone be able to take a look at the three parts of the code that I
modified and let me know if I missed something?
Also, the code mentions logfiles. Where do those live?
Thank you very much,
seg
_Modified Part 1_
METHOD=SGE
if [ "x$SGE_ROOT" = "x" ] ; then
if [ -f /bsp/cluster/sge/default/common/settings.sh ] ; then
. /bsp/cluster/sge/default/common/settings.sh
elif [ -f /bsp/cluster/sge/default/common/settings.csh ] ; then
. /bsp/cluster/sge/default/common/settings.csh
else
METHOD=NONE
fi
fi
_Modified Part 2_
map_qname ()
{
if [ $1 -le 20 ] ; then
queue=all.q
elif [ $1 -le 120 ] ; then
queue=all.q
elif [ $1 -le 1440 ] ; then
queue=all.q
else
queue=long.q
fi
echo "Estimated time was $1 mins: queue name is $queue"
}
_Modified Part 3_
queue=all.q
[log in to unmask]
MailOpts="y"
|