Tried that as well. It never actually did anything.
As soon as I enter my command I get 100%cpu, 0%mem and it stays that way for
however long its "running".
>> first_flirt rawdata/T1 -inweight rawdata/neckMask firstSeg/T1_to_std -d &
This worked prior to the recent patch, however there is no difference
between the first_flirt scripts (according to diff).
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Brian Patenaude
Sent: Tuesday, September 25, 2007 3:24 PM
To: [log in to unmask]
Subject: Re: [FSL] first_flirt
Hi,
Have you tried the "-d" option to see at what stage it stalls (you can tell
by what output is there).
Cheers,
Brian
> Long like 200 minutes before I killed it long.
>
> The individual steps take around 5 minutes on my machine.
>
> -chris
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On
> Behalf Of Brian Patenaude
> Sent: Tuesday, September 25, 2007 3:00 PM
> To: [log in to unmask]
> Subject: Re: [FSL] first_flirt
>
> How long is long? Though I'm not sure why it would be any different
> then running the individual steps manually.
>
> It seems the -inweight option was overlooked from the run_first_all
> script. The script should be straight forward to edit though, to add
> the option.
>
> Cheers
>
> Brian
>
>> whenever i try to run first_flirt (4.0.1) the process hangs, and i
>> get 100% cpu usage, but nothing is actually happening. the process
>> sat idle (with 100% cpu, 0% mem) for a long time. However i can run
>> all the steps of first_flirt manually and everything works.
>>
>> also, is there a way to feed an -inweight mask into run_first_all ?
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