Hi - the easiest fix is just to unset SGE_ROOT at the top of the
$FSLDIR/bin/feat script.
cheers.
On 21 Sep 2007, at 08:40, Neil Killeen wrote:
> Hi
>
> I'd like to have FEAT *not* use the cluster queue (just for the
> moment, don't ask me why ;
> I do want other things to use it so I can't unset the SGE
> environment variable.
>
> So I modified fsl_sub to add an extra argument which I could pass
> in to tell it to
> not use the queue. I then went hunting for where feat calls
> fsl_sub, but I
> can't find it ! I grepped in bin to find all the things calling
> fsl_sub. This gives me:
>
>
> bedpostx
> fslvbm_2_template
> fslvbm_3_proc
> possumX
> possumX
> run_first_all
> tbss_2_reg
>
>
> However, as far as I can tell, none of these are called by feat or
> its dependents...
>
>
> Can someone enlighten me as to how feat is getting to fsl_sub (or
> if not to fsl_sub,
> to the queue).
>
> thanks
> Neil
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Stephen M. Smith, Professor of Biomedical Engineering
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