Hi - afaik, wrt loading structural images, AFNI at present just looks for
analyze images in the current FEAT directory not containing the string
"stat". So I think that, yes, the best workaround currently is to copy any
structural images you want AFNI to see into the FEAT directory (or link to
them).
Thanks, Steve.
On Mon, 20 Jan 2003, Andy Goldfine wrote:
> I found the AFNI rendering plugin to be a great way to view results of my
> FSL process but had a problem with the anatomical underlay when viewing
> results from a higher level analysis. The rendering plugin from the higher
> level analysis only sees the mask as a possible image for an underlay. My
> solution was to change the file highres.hdr which was set as a link to
> reg/highres.hdr (which doesn't exist in the higher level cope folder)
> to ../../lowerlevel.feat/reg/highres.hdr. Is there an easier way for this
> to work? Thanks.
>
Stephen M. Smith
Head of Image Analysis, FMRIB
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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