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November 2012

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Subject	From	Date	Size
Re: --pgs [WAS: RE: [OXSTATGEN] -phase with phased input]	Latchezar (Lucho) Dimitrov	Fri, 30 Nov 2012 20:50:55 +0000	742 lines
Re: --pgs [WAS: RE: [OXSTATGEN] -phase with phased input]	Bryan Howie	Fri, 30 Nov 2012 12:22:59 -0600	617 lines
Re: strand information for IMPUTE2	Bryan Howie	Fri, 30 Nov 2012 12:16:55 -0600	102 lines
Do I have any strand aligning issue with my data?	Rui Luo	Fri, 30 Nov 2012 17:58:10 +0000	44 lines
Re: Phasing large sample sizes	olivier delaneau	Fri, 30 Nov 2012 10:37:05 +0000	1312 lines
Re: Phasing large sample sizes	Stephane Bourgeois	Fri, 30 Nov 2012 10:26:40 -0000	1476 lines
Re: Shapeit exit code	olivier delaneau	Fri, 30 Nov 2012 10:25:53 +0000	172 lines
Re: Shapeit exit code	Stephane Bourgeois	Fri, 30 Nov 2012 10:23:52 -0000	187 lines
Shapeit exit code	Chen Peng	Fri, 30 Nov 2012 11:21:53 +0800	98 lines
Re: Phasing large sample sizes	Jonathan Marchini	Thu, 29 Nov 2012 23:38:38 +0000	1646 lines
strand information for IMPUTE2	Rui Luo	Thu, 29 Nov 2012 20:15:51 +0000	30 lines
--pgs [WAS: RE: [OXSTATGEN] -phase with phased input]	Latchezar (Lucho) Dimitrov	Thu, 29 Nov 2012 17:15:59 +0000	579 lines
Re: Phasing large sample sizes	Kalliope Panoutsopoulou	Thu, 29 Nov 2012 13:49:56 -0000	1107 lines
[SHAPEIT.v1.ESHG pre-release Error]	Ismeet Kaur	Thu, 29 Nov 2012 11:24:19 +0000	19 lines
[SHAPEIT.v1.ESHG pre-release not working]	Ismeet Kaur	Thu, 29 Nov 2012 11:11:05 +0000	22 lines
Re: Phasing large sample sizes	Stephane Bourgeois	Thu, 29 Nov 2012 10:44:04 -0000	1168 lines
Re: phasing large data sets with SHAPEIT	Petr Danecek	Thu, 29 Nov 2012 08:51:10 +0100	98 lines
Re: -phase with phased input	Bryan Howie	Wed, 28 Nov 2012 17:38:23 -0600	414 lines
Re: Building internal reference panels	Bryan Howie	Wed, 28 Nov 2012 17:26:15 -0600	116 lines
Re: Phasing large sample sizes	Jonathan Marchini	Wed, 28 Nov 2012 23:20:12 +0000	1361 lines
Re: phasing large data sets with SHAPEIT	Bryan Howie	Wed, 28 Nov 2012 17:08:45 -0600	140 lines
Re: Phasing large sample sizes	Bryan Howie	Wed, 28 Nov 2012 17:02:43 -0600	1067 lines
Re: Phasing large sample sizes	Jie Huang	Wed, 28 Nov 2012 22:57:18 -0000	1192 lines
Re: dosage file format for IMPUTE2 output	Bryan Howie	Wed, 28 Nov 2012 16:48:49 -0600	87 lines
dosage file format for IMPUTE2 output	Rui Luo	Wed, 28 Nov 2012 22:12:45 +0000	24 lines
Re: Phasing large sample sizes	Bryan Howie	Wed, 28 Nov 2012 16:08:31 -0600	961 lines
Re: Phasing large sample sizes	Jie Huang	Wed, 28 Nov 2012 19:12:52 -0000	1026 lines
Re: Phasing large sample sizes	Bryan Howie	Wed, 28 Nov 2012 12:17:59 -0600	1178 lines
Re: Phasing large sample sizes	Stephane Bourgeois	Wed, 28 Nov 2012 15:59:29 -0000	215 lines
Re: Phasing large sample sizes	Petr Danecek	Wed, 28 Nov 2012 15:42:29 +0100	484 lines
Re: Phasing large sample sizes	Stephane Bourgeois	Wed, 28 Nov 2012 14:09:50 -0000	1180 lines
Phasing large sample sizes	Kalliope Panoutsopoulou	Wed, 28 Nov 2012 13:45:51 -0000	1078 lines
Re: ShapeIT: execution error...	olivier delaneau	Wed, 28 Nov 2012 10:12:28 +0000	653 lines
Re: ShapeIT: execution error...	Manon Bernard	Tue, 27 Nov 2012 11:42:02 -0500	733 lines
Re: ShapeIT: execution error...	olivier delaneau	Tue, 27 Nov 2012 13:38:38 +0000	433 lines
Re: phasing large data sets with SHAPEIT	Petr Danecek	Mon, 26 Nov 2012 15:35:29 +0100	53 lines
Re: phasing large data sets with SHAPEIT	Jonathan Marchini	Mon, 26 Nov 2012 13:35:47 +0000	43 lines
phasing large data sets with SHAPEIT	Petr Danecek	Mon, 26 Nov 2012 14:33:57 +0100	32 lines
ShapeIT: execution error...	Manon Bernard	Sat, 24 Nov 2012 11:49:51 -0500	1789 lines
Building internal reference panels	Natalie Van Zuydam	Thu, 22 Nov 2012 14:31:40 +0000	101 lines
Re: -phase with phased input	Latchezar (Lucho) Dimitrov	Thu, 22 Nov 2012 00:32:37 +0000	374 lines
Re: -phase with phased input	Bryan Howie	Wed, 21 Nov 2012 14:22:28 -0600	186 lines
-phase with phased input	Latchezar (Lucho) Dimitrov	Wed, 21 Nov 2012 00:59:49 +0000	46 lines
Re: Imputation for a correlated sample	Latchezar (Lucho) Dimitrov	Mon, 19 Nov 2012 21:05:02 +0000	841 lines
Re: -pgs with IMPUTE2 and use_prehase gives only homozygotes for typed SNPs	Dina Christian	Mon, 19 Nov 2012 21:57:31 +0100	524 lines
Re: Imputation for a correlated sample	Bryan Howie	Mon, 19 Nov 2012 14:49:47 -0600	712 lines
Re: Imputation for a correlated sample	Latchezar (Lucho) Dimitrov	Mon, 19 Nov 2012 20:35:54 +0000	648 lines
Re: Imputation for a correlated sample	Bryan Howie	Mon, 19 Nov 2012 14:27:53 -0600	520 lines
Re: -pgs with IMPUTE2 and use_prehase gives only homozygotes for typed SNPs	Bryan Howie	Mon, 19 Nov 2012 14:05:27 -0600	421 lines
Re: -pgs with IMPUTE2 and use_prehase gives only homozygotes for typed SNPs	Dina Christian	Mon, 19 Nov 2012 20:55:13 +0100	371 lines
Re: Imputation for a correlated sample	Bryan Howie	Mon, 19 Nov 2012 13:54:51 -0600	459 lines
Re: Imputation for a correlated sample	Bryan Howie	Mon, 19 Nov 2012 13:47:20 -0600	413 lines
Re: -pgs with IMPUTE2 and use_prehase gives only homozygotes for typed SNPs	Bryan Howie	Mon, 19 Nov 2012 13:26:53 -0600	299 lines
Re: Imputation for a correlated sample	Latchezar (Lucho) Dimitrov	Mon, 19 Nov 2012 19:24:58 +0000	349 lines
Re: phased vs unphased genotype mismatches	Bryan Howie	Mon, 19 Nov 2012 13:01:05 -0600	89 lines
Re: Imputation for a correlated sample	Jonathan Marchini	Mon, 19 Nov 2012 17:04:52 +0000	294 lines
Re: Imputation for a correlated sample	Margrat Ge	Mon, 19 Nov 2012 11:51:28 -0500	176 lines
Re: Imputation for a correlated sample	Margrat Ge	Mon, 19 Nov 2012 11:49:26 -0500	163 lines
Re: Alleles flipped	Jayanta Gupta	Mon, 19 Nov 2012 10:16:40 -0500	269 lines
-pgs with IMPUTE2 and use_prehase gives only homozygotes for typed SNPs	Dina Christian	Mon, 19 Nov 2012 15:42:07 +0100	245 lines
Re: Imputation for a correlated sample	Manon Bernard	Fri, 16 Nov 2012 15:01:07 -0500	204 lines
Multimix - missing data	Claudia Moreau	Fri, 16 Nov 2012 18:44:57 +0000	22 lines
Re: Imputation for a correlated sample	Latchezar (Lucho) Dimitrov	Fri, 16 Nov 2012 17:14:33 +0000	163 lines
Imputation for a correlated sample	Margrat Ge	Fri, 16 Nov 2012 11:54:46 -0500	30 lines
phased vs unphased genotype mismatches	Petr Danecek	Fri, 16 Nov 2012 10:39:45 +0100	28 lines
Re: Alleles flipped	Jayanta Gupta	Thu, 15 Nov 2012 15:18:08 -0500	275 lines
Re: Alleles flipped	Bryan Howie	Thu, 15 Nov 2012 14:02:50 -0600	225 lines
Re: SHAPEIT reordering of samples	Latchezar (Lucho) Dimitrov	Thu, 15 Nov 2012 15:59:53 +0000	711 lines
Re: SHAPEIT reordering of samples	olivier delaneau	Thu, 15 Nov 2012 12:28:47 +0000	608 lines
Re: META and linear regression	Gavin Band	Thu, 15 Nov 2012 10:22:55 +0000	94 lines
Re: SHAPEIT reordering of samples	Latchezar (Lucho) Dimitrov	Wed, 14 Nov 2012 17:48:39 +0000	502 lines
Re: SHAPEIT reordering of samples	olivier delaneau	Wed, 14 Nov 2012 12:30:19 +0000	99 lines
Re: Alleles flipped	Jayanta Gupta	Tue, 13 Nov 2012 21:19:10 -0500	178 lines
Re: Alleles flipped	Bryan Howie	Tue, 13 Nov 2012 15:31:36 -0800	126 lines
Re: IMPUTE2: missingness treshold for accurate imputation	Bryan Howie	Tue, 13 Nov 2012 15:27:57 -0800	272 lines
Alleles flipped	Jayanta Gupta	Tue, 13 Nov 2012 18:16:40 -0500	79 lines
Re: IMPUTE2: missingness treshold for accurate imputation	Jie Huang	Tue, 13 Nov 2012 22:21:18 -0000	289 lines
SHAPEIT reordering of samples	Latchezar (Lucho) Dimitrov	Tue, 13 Nov 2012 20:55:37 +0000	26 lines
Re: IMPUTE2: missingness treshold for accurate imputation	Bryan Howie	Tue, 13 Nov 2012 12:20:33 -0800	117 lines
Re: nan's in X nonPAR imputation	Bryan Howie	Tue, 13 Nov 2012 12:02:39 -0800	151 lines
Re: IMPUTE2: Problem with equal output probabilities	Bryan Howie	Tue, 13 Nov 2012 11:23:17 -0800	73 lines
Re: IMPUTE2: Problem with equal output probabilities	Lisbeth Carstensen	Tue, 13 Nov 2012 07:27:29 +0000	24 lines
IMPUTE2: Problem with equal output probabilities	Dominic Chan	Sat, 10 Nov 2012 00:00:32 -0800	52 lines
Re: META and linear regression	Nab Raj Roshyara	Sat, 10 Nov 2012 00:15:06 +0000	95 lines
nan's in X nonPAR imputation	Mychaleckyj, Josyf (jcm6t)	Fri, 9 Nov 2012 15:17:57 +0000	96 lines
IMPUTE2: missingness treshold for accurate imputation	Vince Forgetta	Fri, 9 Nov 2012 15:03:15 +0000	26 lines
Re: 100 sample minimum in SNPTEST still?	Gavin Band	Tue, 6 Nov 2012 10:19:45 +0000	26 lines
2 features to suggest for IMPUTE2	Jie Huang	Tue, 6 Nov 2012 08:57:54 -0000	272 lines
100 sample minimum in SNPTEST still?	Ben Weaver	Mon, 5 Nov 2012 23:21:59 +0000	15 lines
Re: Limit on number of covariates?	Andrew Morris	Mon, 5 Nov 2012 14:29:30 +0000	93 lines
Re: Limit on number of covariates?	Mark Iles	Mon, 5 Nov 2012 13:09:51 +0000	84 lines
Re: Limit on number of covariates?	Dina Christian	Mon, 5 Nov 2012 14:09:28 +0100	36 lines
Limit on number of covariates?	Andrew Morris	Mon, 5 Nov 2012 12:40:14 +0000	47 lines
META and linear regression	Kovel, C.G.F. de	Mon, 5 Nov 2012 09:57:22 +0000	63 lines
Filtering out indels after imputation and using ATCG in ped file?	Stephane Bourgeois	Thu, 1 Nov 2012 10:16:00 -0000	150 lines
Re: Wrong gtool version in the tgz file SORRY, wrong	Stephane Bourgeois	Thu, 1 Nov 2012 10:12:03 -0000	238 lines

OXSTATGEN Archives

November 2012

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