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February 2016

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Subject	From	Date	Size
SHAPEIT2 and CPU throttling?	Sarah Nelson	Mon, 29 Feb 2016 12:46:15 -0800	116 lines
Re: Phasing with a reference panel	Till Andlauer	Mon, 29 Feb 2016 14:11:26 +0100	88 lines
Phasing with a reference panel	Serena Aneli	Mon, 29 Feb 2016 12:44:57 +0000	87 lines
Oxford Statistics Phasing Server	Jonathan Marchini	Mon, 29 Feb 2016 09:31:48 +0000	92 lines
New software release PHENIX	Jonathan Marchini	Mon, 29 Feb 2016 09:26:00 +0000	38 lines
Re: Which 1000G reference set to use for impuation?	Jonathan Marchini	Mon, 29 Feb 2016 08:53:05 +0000	220 lines
Re: Which 1000G reference set to use for impuation?	Sander W. van der Laan MSc.	Sat, 27 Feb 2016 14:37:43 +0100	141 lines
Re: Which 1000G reference set to use for impuation?	M.C. Medina Gomez	Sat, 27 Feb 2016 11:22:12 +0000	120 lines
Re: Which 1000G reference set to use for impuation?	Till Andlauer	Sat, 27 Feb 2016 10:51:48 +0100	78 lines
Which 1000G reference set to use for impuation?	Dijk, FN (bkk)	Fri, 26 Feb 2016 18:29:09 +0000	126 lines
Re: Question about SHAPEIT genotype calling after GATK haplotype calling	Warren W. Kretzschmar	Fri, 26 Feb 2016 04:07:24 -0800	202 lines
Re: Question about SHAPEIT genotype calling after GATK haplotype calling	Tommy Carstensen	Wed, 24 Feb 2016 13:10:54 +0000	153 lines
Re: QCTool issue	Anuj Goel	Wed, 24 Feb 2016 12:20:34 +0000	138 lines
Re: QCTool issue	Gavin Band	Wed, 24 Feb 2016 12:10:59 +0000	128 lines
Re: QCTool issue	Anuj Goel	Wed, 24 Feb 2016 12:05:26 +0000	686 lines
Re: QCTool issue	Gavin Band	Wed, 24 Feb 2016 12:00:34 +0000	583 lines
QCTool issue	Anuj Goel	Tue, 23 Feb 2016 13:01:39 +0000	455 lines
Question about SHAPEIT genotype calling after GATK haplotype calling	Claringbould, Annique	Tue, 23 Feb 2016 10:37:56 +0000	103 lines
Re: Conversion of VCFv4.2 to Oxford format with 3 probabilities	Till Andlauer	Fri, 19 Feb 2016 22:51:04 +0100	80 lines
Re: Conversion of VCFv4.2 to Oxford format with 3 probabilities	Warren W. Kretzschmar	Fri, 19 Feb 2016 10:00:58 +0100	147 lines
Registration now open for PROBABILISTIC MODELING IN GENOMICS Sept 12-14 2016	Jonathan Marchini	Fri, 19 Feb 2016 07:55:43 +0000	31 lines
Re: Conversion of VCFv4.2 to Oxford format with 3 probabilities	Sarah Nelson	Thu, 18 Feb 2016 10:52:26 -0800	49 lines
Conversion of VCFv4.2 to Oxford format with 3 probabilities	Till Andlauer	Thu, 18 Feb 2016 19:27:00 +0100	27 lines
Re: SNPTEST -statify_on sex with continuous outcome error	Gavin Band	Wed, 17 Feb 2016 22:58:31 +0000	219 lines
SNPTEST -statify_on sex with continuous outcome error	EJ Mountjoy	Wed, 17 Feb 2016 17:36:39 +0000	91 lines
IMPUTE2: phasing of untyped genotypes	Bengt Sennblad	Wed, 17 Feb 2016 08:36:24 +0000	38 lines
Re: Problem running META v1.7 Linux (x86_64) Static Executable	Heather Cordell	Tue, 16 Feb 2016 14:13:17 +0000	696 lines
Problem running META v1.7 Linux (x86_64) Static Executable	Jankipersadsing, SA (medgen)	Tue, 16 Feb 2016 13:19:18 +0000	667 lines
Re: sample exclusion list	Klaudia Walter	Fri, 12 Feb 2016 14:40:02 +0000	61 lines
Re: qctool -snp-match-fields, match on chr?	Samantha Streicher	Thu, 11 Feb 2016 20:16:25 -0500	213 lines
Re: qctool -snp-match-fields, match on chr?	Gavin Band	Thu, 11 Feb 2016 22:37:20 +0000	72 lines
qctool -snp-match-fields, match on chr?	Samantha Streicher	Thu, 11 Feb 2016 18:33:50 +0000	44 lines
sample exclusion list	Klaudia Walter	Thu, 11 Feb 2016 13:10:36 +0000	42 lines
phasing of untyped genotypes	Bengt Sennblad	Wed, 10 Feb 2016 16:55:24 +0000	39 lines
Re: HAP/LEGEND/SAMPLE to VCF	Sander W. van der Laan MSc.	Fri, 5 Feb 2016 19:38:23 +0100	251 lines
Re: HAP/LEGEND/SAMPLE to VCF	Warren W. Kretzschmar	Fri, 5 Feb 2016 17:52:26 +0000	185 lines
HAP/LEGEND/SAMPLE to VCF	Sander W. van der Laan	Fri, 5 Feb 2016 17:14:48 +0100	133 lines
Importance of _ref_ allele	Latchezar (Lucho) Dimitrov	Thu, 4 Feb 2016 14:17:42 -0500	259 lines
Re: QCTOOL (v1.5) -incl-snpids vs. -incl-rsids	Sander W. van der Laan	Thu, 4 Feb 2016 16:37:02 +0100	321 lines
Re: File format	Sander W. van der Laan	Thu, 4 Feb 2016 16:36:07 +0100	241 lines
Re: Scientific Linux release 7.1 (Nitrogen) Shapeit SNPtest	Thibaud Boutin	Thu, 4 Feb 2016 15:01:29 +0000	29 lines
Re: Scientific Linux release 7.1 (Nitrogen) Shapeit SNPtest	Gavin Band	Thu, 4 Feb 2016 14:27:30 +0000	40 lines
Re: QCTOOL (v1.5) -incl-snpids vs. -incl-rsids	Gavin Band	Thu, 4 Feb 2016 14:27:03 +0000	123 lines
Re: File format	Gavin Band	Thu, 4 Feb 2016 14:25:53 +0000	90 lines
File format	Sander W. van der Laan	Thu, 4 Feb 2016 14:51:21 +0100	188 lines
Re: QCTOOL (v1.5) -incl-snpids vs. -incl-rsids	Sander W. van der Laan	Thu, 4 Feb 2016 14:37:15 +0100	267 lines
Re: QCTOOL (v1.5) -incl-snpids vs. -incl-rsids	Gavin Band	Thu, 4 Feb 2016 11:01:23 +0000	62 lines
QCTOOL (v1.5) -incl-snpids vs. -incl-rsids	Sander W. van der Laan	Thu, 4 Feb 2016 11:53:09 +0100	116 lines
Re: Scientific Linux release 7.1 (Nitrogen) Shapeit SNPtest	Thibaud Boutin	Wed, 3 Feb 2016 17:16:43 +0000	28 lines
Scientific Linux release 7.1 (Nitrogen)	John Ireland	Wed, 3 Feb 2016 15:43:46 +0000	28 lines
Read aware phasing of the X chromosome using SHAPEIT	Daniel Rubi	Wed, 3 Feb 2016 15:21:48 +0000	38 lines
ERROR: Nan in expectationUNR	Guy Reeves	Tue, 2 Feb 2016 17:51:18 +0000	30 lines
Re: Phasing one guy using SHAPEIT	Jared O'Connell	Tue, 2 Feb 2016 09:07:00 +0000	18 lines
Re: Phasing one guy using SHAPEIT	Kshitij Tayal	Tue, 2 Feb 2016 12:54:21 +0530	70 lines
Processing Time for SNPTEST	Yesha Patel	Tue, 2 Feb 2016 01:23:40 +0000	877 lines
Re: Phasing one guy using SHAPEIT	Jared O'Connell	Mon, 1 Feb 2016 16:33:05 +0000	77 lines