Dear expert team,
I am currently having troubles running fix on the components I select as noise and was wondering if you may know why this is happening. I did a few checks and it all seems fine to us, so it’s a bit of riddle why it’s not working.
This is what I did:
I recorded one dataset of fMRI data with the 7T scanner, divided into two parts by a intermittent structural scan, resulting in bold_pt1.nii.gz and bold_pt2.nii.gz – one is slightly longer than the other.
I ran my whole preprocessing pipeline on the first half, and it went well.
I then first ran FEAT on the second half, which was successful, however when manually inspecting the ICs in melodic view on fsleyes, the power spectra are not being displayed (1). This wasn’t a display error- I can see the power spectra of a normal BOLD volume. This was slightly annoying, but because the power spectra of the ICs were visible in the report (2), I just used these to classify noisy ICs and create my labels.txt file (3). Finally, I ran the fix command, which also confirmed that it ran through (4)- however, didn’t produce any output files (or error reports).
I retried running FEAT, but again I only got these ICs where the powerspectra wouldn’t display.
I'd be grateful for any hint what is going on.
Thanks a lot,
Svenja
1) image001.png
2) labels.txt
3) Screenshot 2023-10-21 at 09.15.57.png
4)
FIX Applying cleanup using cleanup file: /Users/xpsy1114/Documents/projects/multiple_clocks/data/derivatives/sub-01/func/preproc_clean_02.feat/labels.txt and motion cleanup set to 1
Finished fix using labels in /Users/xpsy1114/Documents/projects/multiple_clocks/data/derivatives/sub-01/func/preproc_clean_02.feat/labels.txt
Image Exception : #63 :: No image files match: /Users/xpsy1114/Documents/projects/multiple_clocks/data/derivatives/sub-01/func/preproc_clean_02.feat/filtered_func_data_clean
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/Users/xpsy1114/Documents/projects/multiple_clocks/data/derivatives/sub-01/func/preproc_clean_02.feat/filtered_func_data.ica
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