|
Dear expert team,
I am currently having troubles running fix on the components I select as noise and was wondering if you may know why this is happening. I did a few checks and it all seems fine to us, so it’s a bit of riddle why it’s not working.
This is what I did:
I recorded one dataset of fMRI data with the 7T scanner, divided into two parts by a intermittent structural scan, resulting in bold_pt1.nii.gz and bold_pt2.nii.gz – one is slightly longer than the other.
I ran my whole preprocessing pipeline on the first half, and it went well.
I then first ran FEAT on the second half, which was successful, however when manually inspecting the ICs in melodic view on fsleyes, the power spectra are not being displayed (1). This wasn’t a display error- I can see the power spectra of a normal BOLD volume. This was slightly annoying, but because the power spectra of the ICs were visible in the report (2), I just used these to classify noisy ICs and create my labels.txt file (3). Finally, I ran the fix command, which also confirmed that it ran through (4)- however, didn’t produce any output files (or error reports).
I retried running FEAT, but again I only got these ICs where the powerspectra wouldn’t display.
I'd be grateful for any hint what is going on.
Thanks a lot,
Svenja
1) image001.png
2) labels.txt
3) Screenshot 2023-10-21 at 09.15.57.png
4)
FIX Applying cleanup using cleanup file: /Users/xpsy1114/Documents/projects/multiple_clocks/data/derivatives/sub-01/func/preproc_clean_02.feat/labels.txt and motion cleanup set to 1
Finished fix using labels in /Users/xpsy1114/Documents/projects/multiple_clocks/data/derivatives/sub-01/func/preproc_clean_02.feat/labels.txt
Image Exception : #63 :: No image files match: /Users/xpsy1114/Documents/projects/multiple_clocks/data/derivatives/sub-01/func/preproc_clean_02.feat/filtered_func_data_clean
########################################################################
To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=FSL&A=1
This message was issued to members of www.jiscmail.ac.uk/FSL, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
/Users/xpsy1114/Documents/projects/multiple_clocks/data/derivatives/sub-01/func/preproc_clean_02.feat/filtered_func_data.ica
1, Noise, True
2, Unknown, False
3, Noise, True
4, Signal, False
5, Noise, True
6, Signal, False
7, Signal, False
8, Signal, False
9, Signal, False
10, Noise, True
11, Signal, False
12, Signal, False
13, Noise, True
14, Signal, False
15, Signal, False
16, Signal, False
17, Noise, True
18, Noise, True
19, Noise, True
20, Signal, False
21, Signal, False
22, Unknown, False
23, Signal, False
24, Noise, True
25, Noise, True
26, Signal, False
27, Noise, True
28, Signal, False
29, Noise, True
30, Noise, True
31, Signal, False
32, Noise, True
33, Noise, True
34, Signal, False
35, Signal, False
36, Noise, True
37, Signal, False
38, Noise, True
39, Signal, False
40, Noise, True
41, Noise, True
42, Noise, True
43, Signal, False
44, Signal, False
45, Signal, False
46, Signal, False
47, Noise, True
48, Noise, True
49, Signal, False
50, Signal, False
51, Signal, False
52, Noise, True
53, Signal, False
54, Signal, False
55, Signal, False
56, Signal, False
57, Signal, False
58, Signal, False
59, Signal, False
60, Signal, False
61, Signal, False
62, Signal, False
63, Unknown, False
64, Signal, False
65, Signal, False
66, Noise, True
67, Signal, False
68, Noise, True
69, Noise, True
70, Signal, False
71, Signal, False
72, Noise, True
73, Noise, True
74, Noise, True
75, Noise, True
76, Noise, True
77, Noise, True
78, Signal, False
79, Noise, True
80, Signal, False
81, Signal, False
82, Signal, False
83, Signal, False
84, Noise, True
85, Noise, True
86, Unknown, False
87, Signal, False
88, Unknown, False
89, Signal, False
90, Signal, False
91, Noise, True
92, Signal, False
93, Signal, False
94, Noise, True
95, Unknown, False
96, Unknown, False
97, Signal, False
98, Signal, False
99, Signal, False
100, Signal, False
101, Signal, False
102, Signal, False
103, Noise, True
104, Signal, False
105, Signal, False
106, Signal, False
107, Signal, False
108, Noise, True
109, Signal, False
110, Signal, False
111, Noise, True
112, Noise, True
113, Signal, False
114, Unknown, False
115, Signal, False
116, Signal, False
117, Signal, False
118, Noise, True
119, Signal, False
120, Noise, True
121, Signal, False
122, Signal, False
123, Signal, False
124, Signal, False
125, Signal, False
126, Signal, False
127, Signal, False
128, Signal, False
129, Signal, False
130, Signal, False
131, Noise, True
132, Signal, False
133, Signal, False
134, Signal, False
135, Noise, True
136, Noise, True
137, Signal, False
138, Noise, True
139, Signal, False
140, Noise, True
141, Signal, False
142, Signal, False
143, Signal, False
144, Signal, False
145, Signal, False
146, Signal, False
147, Noise, True
148, Noise, True
149, Noise, True
150, Signal, False
151, Signal, False
152, Unknown, False
153, Noise, True
154, Signal, False
155, Signal, False
156, Signal, False
157, Signal, False
158, Signal, False
159, Signal, False
160, Noise, True
161, Signal, False
162, Noise, True
163, Signal, False
164, Noise, True
165, Unknown, False
166, Signal, False
167, Signal, False
168, Noise, True
169, Signal, False
170, Noise, True
171, Signal, False
172, Noise, True
173, Signal, False
174, Unknown, False
175, Noise, True
176, Noise, True
177, Signal, False
178, Signal, False
179, Signal, False
180, Signal, False
181, Noise, True
182, Noise, True
183, Noise, True
184, Signal, False
185, Signal, False
186, Noise, True
187, Unknown, False
188, Noise, True
189, Signal, False
190, Noise, True
191, Noise, True
192, Signal, False
193, Signal, False
194, Noise, True
195, Signal, False
196, Unknown, False
197, Unknown, False
198, Noise, True
199, Noise, True
[1, 3, 5, 10, 13, 17, 18, 19, 24, 25, 27, 29, 30, 32, 33, 36, 38, 40, 41, 42, 47, 48, 52, 66, 68, 69, 72, 73, 74, 75, 76, 77, 79, 84, 85, 91, 94, 103, 108, 111, 112, 118, 120, 131, 135, 136, 138, 140, 147, 148, 149, 153, 160, 162, 164, 168, 170, 172, 175, 176, 181, 182, 183, 186, 188, 190, 191, 194, 198, 199]
########################################################################
To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=FSL&A=1
This message was issued to members of www.jiscmail.ac.uk/FSL, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
|
