Hi Matteo!
again thank you for answering and sharing information.
Finally, the eddy_quad output I receive is:
avg_b0
avg_b0_pe0
avg_b1500
cnr0000.nii.gz
cnr0001.nii.gz
eddy_msr
qc.json
jc.pdf
ref.txt
ref_list
vdm
However, when starting eddy_squad (for 2 subjects to give it a try), it says:
ValueError: /qc.json does not appear to be a valid qc.json file
Do you have any ideas?
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