Hi Ida,
It seems that you had some CNR values extracted for some, but not all, of your subjects. Could that be the case?
In order to compare study-wise subjects, they should be acquired and processed in the same way (i.e., generating the same output).
Hope this helps, cheers,
Matteo
> On 24 Apr 2020, at 11:20, Ida Schulze Kalthoff <[log in to unmask]> wrote:
>
> Hi Matteo!
>
> I made the list of directories and still squad does not work now saying:
>
> Generating group database...
> Traceback (most recent call last):
> File "/usr/local/fsl/bin/eddy_squad", line 42, in <module>
> main(args.list, args.grouping, args.group_db, args.update, args.output_dir)
> File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/eddy_qc/SQUAD/squad.py", line 87, in main
> db = squad_db.main(out_dir + '/group_db.json', 'w', sList)
> File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.7/site-packages/eddy_qc/SQUAD/squad_db.py", line 64, in main
> raise ValueError('Eddy output inconsistency detected!')
> ValueError: Eddy output inconsistency detected!
>
> The command was:
>
> eddy_squad quad_list.txt -g group_for_squad.txt -u -o squad_qc_240420
>
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