Hi Susan,
Yes, you can use fslstats for each structure as follows:
fslstats <image> -k <mask> -s -m
Cheers,
Paul
On 08/05/2019, SG <[log in to unmask]> wrote:
> Hello,
> I used First and segmented T1 weighted image and made binary masks which I
> used to mask QSM image. Now I'm trying to extract the mean intensity and
> standard deviation of the segments. Can I obtain this using fslstats? Or
> else which command can I use?
>
> ########################################################################
>
> To unsubscribe from the FSL list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
>
########################################################################
To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
|