Hi Abby,
This looks like a networking error, but there is a bug in the
installer script which is masking the true error. Would you be able to
run this version of the installer instead:
https://users.fmrib.ox.ac.uk/~paulmc/fslinstaller.py
It will still fail, but will hopefully give some more useful
information as to what is going wrong:
Cheers,
Paul
On 31/05/2019, Abby tang <[log in to unmask]> wrote:
> Hi
> my python version is Python 2.7.15rc1 (default, Nov 12 2018, 14:31:15)
>
> Best wish
> Abby
>
> Matthew Webster <[log in to unmask]> 于2019年5月30日周四 下午8:47写道:
>
>> Hello,
>> Can you check which version of python your VM has installed (
>> with python --version ) ?
>>
>> Kind Regards
>> Matthew
>> --------------------------------
>> Dr Matthew Webster
>> FMRIB Centre
>> John Radcliffe Hospital
>> University of Oxford
>>
>> > On 30 May 2019, at 09:04, Abby Tang <[log in to unmask]> wrote:
>> >
>> > Hello,
>> > I want to install FSL for my virtual machine --ubuntu 18, but I meet
>> same problem again and again whatever the command is 'python
>> fslinstaller.py ' or 'python fslinstaller.py -D'.
>> > The error is attached at below:
>> >
>> > {'d_dir': None, 'test_csv': None, 'verbose': True, 'get_source': None,
>> 'checksum_type': 'sha256', 'checksum': None, 'quiet': None, 'env_all':
>> None, 'update': None, 'skipchecksum': None, 'get_feeds': None,
>> 'requestversion': None, 'download': None, 'list_versions': None,
>> 'test_installer': None, 'archive': None, 'env_only': None, 'skip_env':
>> None}
>> > --- FSL Installer - Version 3.0.16 ---
>> > [Warning] Some operations of the installer require administative
>> > rights,
>> > for example installing into the default folder of /usr/local.
>> > If your account is an 'Administrator' (you have 'sudo' rights)
>> > then you will be prompted for your administrator password
>> > when necessary.
>> > When asked a question, the default answer is given in square brackets.
>> > Hit the Enter key to accept this default answer.
>> > Calculating fastest mirror
>> > Trying https://fsl.fmrib.ox.ac.uk/fsldownloads/
>> > Attempting to open
>> https://fsl.fmrib.ox.ac.uk/fsldownloads/fslmirrorlist.txt
>> > Received the following mirror list ['
>> https://fsl.fmrib.ox.ac.uk/fsldownloads/']
>> > Checking https://fsl.fmrib.ox.ac.uk/fsldownloads/ for installer
>> information
>> > Looking for manifest at https://fsl.fmrib.ox.ac.uk/fsldownloads/.
>> > Downloading JSON file
>> > Opening https://fsl.fmrib.ox.ac.uk/fsldownloads/manifest.json
>> > Attempting to download
>> https://fsl.fmrib.ox.ac.uk/fsldownloads/manifest.json.
>> > Traceback (most recent call last):
>> > File "fslinstaller.py", line 2899, in <module>
>> > do_install(options, installer_settings)
>> > File "fslinstaller.py", line 2674, in do_install
>> > self_update(settings.mirror)
>> > File "fslinstaller.py", line 1301, in self_update
>> > installer = get_installer(server_url)
>> > File "fslinstaller.py", line 1373, in get_installer
>> > manifest = get_web_manifest(server_url)
>> > File "fslinstaller.py", line 179, in g
>> > cache[key] = f(*args, **kwargs)
>> > File "fslinstaller.py", line 1126, in get_web_manifest
>> > return get_json(download_url + Settings.manifest_json)
>> > File "fslinstaller.py", line 1648, in get_json
>> > url = open_url(web_url)
>> > File "fslinstaller.py", line 924, in open_url
>> > message = e.reason.args[1]
>> > IndexError: tuple index out of range
>> >
>> > Thank you for your help!
>> >
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