Dear Sandra,
Can you check the following:
1) In the output directory are there the files .fixlist and .Rlog1, and do they contain any messages?
2) Are your labelling files in the correct format ( the last line should contain the list of the components, within square brackets, comma separated, and there should be an empty line at the end )?
Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> On 28 May 2019, at 14:46, Sandra Thijssen <[log in to unmask]> wrote:
>
> Dear Matthew,
>
> Those files do not seem to be created (I understand they are hidden files, so have looked in the fix folder using ls –a).
>
> Thanks,
> Sandra
>
> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of Matthew Webster
> Sent: dinsdag 28 mei 2019 15:34
> To: [log in to unmask]
> Subject: Re: [FSL] FIX errors
>
> Dear Sandra,
> Can you also check if there are any extra error messages in
>
> .fix.log and .fix_2b_predict.log?
>
> Kind Regards
> Matthew
> --------------------------------
> Dr Matthew Webster
> FMRIB Centre
> John Radcliffe Hospital
> University of Oxford
>
>
> On 28 May 2019, at 11:35, Sandra Thijssen <[log in to unmask]> wrote:
>
> Dear experts,
>
> I am trying to create a train-weights file using FIX, but am getting the following error:
>
> fix/features.csv': No such file or directory
>
> The logMatlab file reports the following:
>
> ------------------------------------------
> Setting up environment variables
> ---
> LD_LIBRARY_PATH is .:/matlabcompiler/v83/sys/os/glnxa64
> Warning: Name is nonexistent or not a directory: /usr/local/fsl/etc/matlab
>
> In path at 109
> In startup at 1
> Warning: Name is nonexistent or not a directory: /usr/local/fmrib/fmt
>
> In path at 109
> In startup at 2
> /scratch.global/sthijssen/shared/DataAnalysis/MRIdata/ABCDpreprocessedData/Subjects/sub-NDARINVZUDPGDWJ/ses-baselineYear1Arm1/func/feat_analyses/preAroma/sub-NDARINVZUDPGDWJ_ses-baselineYear1Arm1_run-01_preprocessing_preAROMA_7Nov18.feat/
> 103 1
>
> Error Time: 05/28/2019 03:25:28
> Index exceeds matrix dimensions.
>
>
> How would I solve these issues?
>
> Thank you very much for your advice!
>
> Sandra
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