Dear all,
in Shawn Zheng's MotionCor2 it was necessary to crop micrographs
from K2 with the parameter "-crop 3660 3660" during the run to be
correctly process by Gctf called from Relion-2.
Micrographs preprocessed with the Relion-3 implementation of motioncorr
are not cropped (i.e. "xmipp_image_header" issues: "Dimensions : 1 x
1 x 3838 x 3710"), which apparently gives rise to problems when trying
to re-extract older refined coordinates.
Is there a way of cropping the micrographs in Relion-3 running
motioncorr? "-crop 3660 3660" or "--crop 3660 3660" is not accepted by
"Additional Arguments".
Thank you for help,
bw Dieter
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Dieter Blaas,
Max F. Perutz Laboratories
Medical University of Vienna,
Inst. Med. Biochem., Vienna Biocenter (VBC),
Dr. Bohr Gasse 9/3,
A-1030 Vienna, Austria,
Tel: 0043 1 4277 61630,
Fax: 0043 1 4277 9616,
e-mail: [log in to unmask]
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